>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.

Probab=97.61 E-value=0.0034 Score=35.36 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=89.1 Q ss_pred HHHHHHHHHHH--HH----HHHCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH--HHCC Q ss_conf 58999999999--99----97221133---45889999999999731233443024478989999999999863--2102 Q gi|254780540|r 49 AISHSVLPGIV--LS----HMAGIPLE---IGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILI--LKVH 117 (277) Q Consensus 49 alsH~al~Gia--l~----~l~g~~~~---lga~~~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algill~--s~~~ 117 (277) T Consensus 29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~~~~--tl~~~~~~~~~~~~~~~~~~ 106 (267) T pfam02653 29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPEVIV--TLLLNFILRGLTLFLLTGIL 106 (267) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHCCC T ss_conf 5799999999999999999980530899999999999999997458676521429999--99999999999999986355 Q ss_pred C---CCH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 4---410-34577631753466552578998899999999-----86334311346688997618874235669999999 Q gi|254780540|r 118 S---SLH-FSHILLGDMLGISKSDIITTAFFAFISISFLI-----LKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLS 188 (277) Q Consensus 118 ~---~~~-l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~-----~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lia 188 (277) T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~ 186 (267) T pfam02653 107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG 186 (267) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 78877555532554200211257999999999999999999995888469999966599998869988999999999999 Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHH Q ss_conf 999999989899999999----------998778998530--88899999999999999999 Q gi|254780540|r 189 LIIVISLKSIGIILPPAV----------LVLPGATAFLLS--KHHTTMILLSVIISVVCTLV 238 (277) Q Consensus 189 l~v~~~v~~vG~llv~al----------li~Paa~A~~~s--~s~~~~i~~s~~ig~~~~~~ 238 (277) T Consensus 187 ~lagla----G~l~~~~~~~~~p~~~~~~~~~~~~~~viGG~gs~~G~~~ga~~lg~~~~~~ 244 (267) T pfam02653 187 ALAGLA----GALLVLSTGSADPNAGLGLGFDAIAAVVLGGAGSPIGAIVGALIIGLLQSLG 244 (267) T ss_pred HHHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999----9999988356487842769989775101689996299999999999999999

HHsearch alignment for GI: 254780540 and conserved domain: pfam02653