Query gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 277
No_of_seqs 131 out of 2480
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 16:30:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780540.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qi9_A Vitamin B12 import sys 99.9 3E-23 8.8E-28 143.2 15.1 245 20-265 59-320 (326)
2 >2nq2_A Hypothetical ABC trans 99.7 1.9E-16 5.7E-21 106.4 14.6 153 49-201 5-167 (168)
3 >2nq2_A Hypothetical ABC trans 92.5 0.51 1.5E-05 23.3 6.9 60 186-245 67-135 (139)
4 >2jo1_A Phospholemman; FXYD1, 20.3 46 0.0014 12.7 3.7 31 9-40 6-36 (72)
5 >2zxe_G FXYD10, phospholemman- 18.4 51 0.0015 12.5 3.3 30 10-40 10-39 (74)
6 >2jp3_A FXYD domain-containing 18.1 52 0.0015 12.4 3.7 30 10-40 8-37 (67)
7 >1td4_A Head decoration protei 13.7 6.1 0.00018 17.4 -4.5 16 40-55 99-114 (115)
8 >1afo_A Glycophorin A; integra 12.4 75 0.0022 11.6 1.7 25 218-242 4-28 (40)
9 >1tba_A TAFII230, transcriptio 9.1 90 0.0027 11.1 0.2 15 118-132 6-20 (67)
10 >3epo_A Thiamine biosynthesis 8.1 1.1E+02 0.0032 10.7 1.5 20 154-173 16-35 (101)
No 1
>>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* (A:)
Probab=99.91 E-value=3e-23 Score=143.15 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998788999999768996445----89999999999997221-----133458899999999997312334
Q gi|254780540|r 20 SFIITVIVVIPMSVLSCFIILKNQSFAGEA----ISHSVLPGIVLSHMAGI-----PLEIGAFIAGMICTLSAGYLKEKS 90 (277)
Q Consensus 20 all~~~l~~~~~~~lG~~vv~rr~~~~~~a----lsH~al~Gial~~l~g~-----~~~lga~~~~ll~a~li~~l~~r~ 90 (277)
-.+++.+.|...+.-|......-+--++|. ++..+..|++++.+... ....+++..+...........+|+
T Consensus 59 R~l~a~l~G~~LavsG~~~Q~~~rNpLa~P~ilGi~sga~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (326)
T 2qi9_A 59 RTLAVLLVGAALAISGAVXQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFARR 138 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCGGGGTHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999993698767424540258999999999824540278999999999999999999987621
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHH-HHHCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 43024478--98999999999986-32102-4410345776317534665525789988999999998633431134668
Q gi|254780540|r 91 YFQEDLVL--SIVFSGMFAIGIIL-ILKVH-SSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP 166 (277)
Q Consensus 91 ~~~~d~~i--giv~~~~~algill-~s~~~-~~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~ 166 (277)
+.+.+..+ |+..+..++....+ ....+ ...+...++.|+....+|+|++...+...+........+|++..+.+||
T Consensus 139 ~~~~~~lil~gi~~~~~~~a~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~lg~ 218 (326)
T 2qi9_A 139 HLSTSRLLLAGVALGIISSALXTWAIYFSTSVDLRQLXYWXXGGFGGVDWRQSWLXLALIPVLLWISSQSRPXNXLALGE 218 (326)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHTCCCTTCCGGGHHHHTTTHHHHHHHTTCHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35640567899999999999999999984079999999987640254674232567875068999999876766544106
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 89976188742356699999999999999898999999999987789985308889999999999999999999999---
Q gi|254780540|r 167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYIS--- 243 (277)
Q Consensus 167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS--- 243 (277)
|.|++.|+|+++++...+.+.++.++.++..+|.+.+.++ +.|+.+.+...++.++.++.+.++|......+-.++
T Consensus 219 ~~A~slGv~v~~~~~~~lil~~~lta~~vs~vG~I~FvGL-i~p~iar~l~~~~~~~~l~~s~l~Ga~lll~~d~l~r~~ 297 (326)
T 2qi9_A 219 ISARQLGLPLWFWRNVLVAATGWXVGVSVALAGAIGFIGL-VIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARLA 297 (326)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSTT-HHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6777068776676689999999999999970358889898-689999986277654699999999999999999999660
Q ss_pred -HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf -9957881899999999999999
Q gi|254780540|r 244 -FFINSAAAPTVVILMAIFFVVV 265 (277)
Q Consensus 244 -~~~~~p~g~~Iv~~~~~~~~~~ 265 (277)
++.+.|.|..+.++.+.+|+..
T Consensus 298 ~~~~eiPvg~~~~liG~p~fi~l 320 (326)
T 2qi9_A 298 LAAAELPIGVVTATLGAPVFIWL 320 (326)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 56666319999999999999997
No 2
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:94-261)
Probab=99.73 E-value=1.9e-16 Score=106.41 Aligned_cols=153 Identities=13% Similarity=0.153 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHCCC-CCCCC--HHHHHHHHHHHHHHHHHHHHHHC--CC--
Q ss_conf 58999999999999722113---34588999999999973123-34430--24478989999999999863210--24--
Q gi|254780540|r 49 AISHSVLPGIVLSHMAGIPL---EIGAFIAGMICTLSAGYLKE-KSYFQ--EDLVLSIVFSGMFAIGIILILKV--HS-- 118 (277)
Q Consensus 49 alsH~al~Gial~~l~g~~~---~lga~~~~ll~a~li~~l~~-r~~~~--~d~~igiv~~~~~algill~s~~--~~-- 118 (277)
+++|.+..|++++..+..+. ...++..+...+..+.++.+ |++.+ +....|+..+..+.....++... +.
T Consensus 5 Gvs~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~ 84 (168)
T 2nq2_A 5 GVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEEK 84 (168)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 87689999999999876226667899999989999999999997078884111100278999999999999997030779
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41034577631753466552578998899999999863343113466889976188742356699999999999999898
Q gi|254780540|r 119 SLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSI 198 (277)
Q Consensus 119 ~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~v 198 (277)
..+++.|++||...++|+|++...+...+........+|+++..++|||.|++.|+|+++.++..+.+.++.++.++..+
T Consensus 85 ~~~~~~wl~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~lg~~~A~slGv~v~~~~~~~l~~~~ll~a~~va~v 164 (168)
T 2nq2_A 85 LPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS 164 (168)
T ss_dssp HHHHHHHTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTGGGGGGSCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999986124357883213432433047988888765525543179699845678778999999999999999998512
Q ss_pred HHH
Q ss_conf 999
Q gi|254780540|r 199 GII 201 (277)
Q Consensus 199 G~l 201 (277)
|.+
T Consensus 165 G~I 167 (168)
T 2nq2_A 165 GSI 167 (168)
T ss_dssp CCC
T ss_pred CHH
T ss_conf 237
No 3
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:1-93,A:262-307)
Probab=92.54 E-value=0.51 Score=23.26 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999989899999999---------998778998530888999999999999999999999999
Q gi|254780540|r 186 VLSLIIVISLKSIGIILPPAV---------LVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF 245 (277)
Q Consensus 186 lial~v~~~v~~vG~llv~al---------li~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~ 245 (277)
+.++.+..+....|.++-.-+ |+.|+...+++.+++|..++.|.++|.......-.+|-.
T Consensus 67 l~a~lvGa~LaiaG~imQ~l~RNPLAdFvGLivPHi~r~lvG~~~~~~ip~s~l~Ga~~l~~aD~~~R~ 135 (139)
T 2nq2_A 67 LTALCVGAGLALSGVVLQGIFRNPLVNWVGLIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARS 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCCSSTTHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999860489898889879999999618886419999999999999999999856
No 4
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=20.28 E-value=46 Score=12.71 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=16.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99733668999999999999998788999999
Q gi|254780540|r 9 LLPLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 9 ~~~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
-+||.|+| +.==+.|++.+.+.-++|..+++
T Consensus 6 ~dpF~YDY-~tLRigGLi~A~vLfi~GI~iil 36 (72)
T 2jo1_A 6 HDPFTYDY-QSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HSGGGCST-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCH-HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 69863545-88750223789999999999998
No 5
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=18.39 E-value=51 Score=12.48 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=14.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9733668999999999999998788999999
Q gi|254780540|r 10 LPLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 10 ~~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
+||.|++ ++==+.|++.+.+.=++|..+++
T Consensus 10 dpF~YDy-~tLRigGLi~A~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDY-YRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9851444-88752006999999999999999
No 6
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=18.09 E-value=52 Score=12.44 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=14.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9733668999999999999998788999999
Q gi|254780540|r 10 LPLTFPAIQNSFIITVIVVIPMSVLSCFIIL 40 (277)
Q Consensus 10 ~~l~~~f~~~all~~~l~~~~~~~lG~~vv~ 40 (277)
+||.|++ ++==+.|++.+.+.-++|..+++
T Consensus 8 dpF~YDy-~tLRigGLi~a~vLfi~GI~iil 37 (67)
T 2jp3_A 8 SPFYYDW-ESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp SGGGGGG-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH-HHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9861443-88630004999999999999998
No 7
>>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} (A:)
Probab=13.69 E-value=6.1 Score=17.45 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9768996445899999
Q gi|254780540|r 40 LKNQSFAGEAISHSVL 55 (277)
Q Consensus 40 ~rr~~~~~~alsH~al 55 (277)
-||.+|.|.++||+++
T Consensus 99 kK~~AF~Gs~iSh~~~ 114 (115)
T 1td4_A 99 KKANAFAGSALSHAAL 114 (115)
T ss_dssp HHHTTTTTSEEEEECC
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 7766662785422358
No 8
>>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} (A:)
Probab=12.36 E-value=75 Score=11.58 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=11.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0888999999999999999999999
Q gi|254780540|r 218 SKHHTTMILLSVIISVVCTLVGIYI 242 (277)
Q Consensus 218 s~s~~~~i~~s~~ig~~~~~~G~~l 242 (277)
.+++++....=.++|+.+++.|..+
T Consensus 4 vh~Fs~pvi~lII~~vmAGvIGtIL 28 (40)
T 1afo_A 4 AHHFSEPEITLIIFGVMAGVIGTIL 28 (40)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4336640389999999998999999
No 9
>>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} (A:)
Probab=9.05 E-value=90 Score=11.14 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 441034577631753
Q gi|254780540|r 118 SSLHFSHILLGDMLG 132 (277)
Q Consensus 118 ~~~~l~~~LfG~il~ 132 (277)
...++..+|||||-.
T Consensus 6 ~~~~LtGfLFGNId~ 20 (67)
T 1tba_A 6 NGLDLTGILFGNIDS 20 (67)
T ss_dssp CSCCCTTHHHHCEET
T ss_pred CCCCEEEEEECCCCC
T ss_conf 771101224424277
No 10
>>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:512-612)
Probab=8.13 E-value=1.1e+02 Score=10.70 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCCHHHHHHHC
Q ss_conf 86334311346688997618
Q gi|254780540|r 154 LKKNDLLLMIFDPMHAHSMQ 173 (277)
Q Consensus 154 ~~~r~l~~~sfD~~~A~~~G 173 (277)
+-|.++.-+++||+.|+..-
T Consensus 16 lDWe~qf~LalDPekAr~~r 35 (101)
T 3epo_A 16 FRWEDQFNLGLDPETARKFH 35 (101)
T ss_dssp TCHHHHHHTSSCHHHHHHHC
T ss_pred CCHHHHHHHCCCHHHHHHHH
T ss_conf 89999998706989999987
Done!