HHSEARCH alignment of GI: 254780540 and SCOP domain: d1l7va_

Alignment
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=2.1e-20  Score=125.66  Aligned_cols=244  Identities=10%  Similarity=0.133  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999998788999999-76899644---5899999999999972211------33458899999999997312334
Q gi|254780540|r   21 FIITVIVVIPMSVLSCFIIL-KNQSFAGE---AISHSVLPGIVLSHMAGIP------LEIGAFIAGMICTLSAGYLKEKS   90 (277)
Q Consensus        21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~~---alsH~al~Gial~~l~g~~------~~lga~~~~ll~a~li~~l~~r~   90 (277)
                      .+++.++|...+.-|..... -|..+.+-   +++..+-.|++++.+++..      ....++..++..........++.
T Consensus        60 ~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (324)
T d1l7va_          60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH  139 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999817988783678754288999999997233225788999999999999999999986146


Q ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHH-HCC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             43024-4789899999999998632-102--4410345776317534665525789988999999998633431134668
Q gi|254780540|r   91 YFQED-LVLSIVFSGMFAIGIILIL-KVH--SSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP  166 (277)
Q Consensus        91 ~~~~d-~~igiv~~~~~algill~s-~~~--~~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~  166 (277)
                      ..+.. ...|+..+..+.....+.. ..+  ...+...|+.|+....+|+|++......... .......|+++.++.||
T Consensus       140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~lgd  218 (324)
T d1l7va_         140 LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVL-LWICCQSRPMNMLALGE  218 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHH-HHHHHCHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH
T ss_conf             88136778899999999999999999547999999999976500445320357788751899-99999984466553036


Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             8997618874235669999999999999989899999999998778998530888999999999999999999999999-
Q gi|254780540|r  167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF-  245 (277)
Q Consensus       167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~-  245 (277)
                      |.|+..|+|+++.+...+...++.++.++..+|.+.+.++ +.|+.+.+...+++++.++.|.++|.......-.++-. 
T Consensus       219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~r~i  297 (324)
T d1l7va_         219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLA  297 (324)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8887068666777799999999999999972364455587-579999986077751799999999999999999999760


Q ss_pred             ---HCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ---578818999999999999999
Q gi|254780540|r  246 ---INSAAAPTVVILMAIFFVVVY  266 (277)
Q Consensus       246 ---~~~p~g~~Iv~~~~~~~~~~~  266 (277)
                         .++|.|-.+.++.+.+|+.-.
T Consensus       298 ~~p~eiPvGvitaliG~P~fi~Ll  321 (324)
T d1l7va_         298 LAAAELPIGVVTATLGAPVFIWLL  321 (324)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             466563299999999999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: ABC transporter involved in vitamin B12 uptake, BtuC
superfamily: ABC transporter involved in vitamin B12 uptake, BtuC
family: ABC transporter involved in vitamin B12 uptake, BtuC
domain: ABC transporter involved in vitamin B12 uptake, BtuC
species: Escherichia coli [TaxId: 562]