Query gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 277 No_of_seqs 131 out of 2480 Neff 7.0 Searched_HMMs 13730 Date Wed Jun 1 09:44:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780540.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1l7va_ f.22.1.1 (A:) ABC tran 99.9 2.1E-20 1.5E-24 125.7 19.1 244 21-266 60-321 (324) 2 d1td4a_ b.85.2.1 (A:) Head dec 12.5 2.4 0.00018 17.5 -4.8 15 41-55 88-102 (103) 3 d1tbaa_ a.15.1.1 (A:) TAF(II)2 10.1 31 0.0023 11.5 0.3 15 118-132 6-20 (67) 4 d1xp8a1 c.37.1.11 (A:15-282) R 4.6 77 0.0056 9.4 1.7 17 163-179 96-112 (268) 5 d1q1ha_ a.4.5.41 (A:) Transcri 4.5 81 0.0059 9.3 1.8 26 162-187 33-58 (88) 6 d1vega_ a.5.2.1 (A:) NEDD8 ult 4.2 87 0.0063 9.1 1.3 16 157-172 34-49 (83) 7 d1ugja_ b.41.1.3 (A:) RIKEN cD 3.5 71 0.0052 9.6 -1.0 15 44-58 21-35 (141) 8 d1mo6a1 c.37.1.11 (A:1-269) Re 3.2 1.2E+02 0.009 8.3 1.7 16 163-178 99-114 (269) 9 d1oede_ f.36.1.1 (E:) Acetylch 2.6 1.6E+02 0.011 7.7 2.6 36 215-250 223-258 (260) 10 d2g3qa1 a.5.2.1 (A:1339-1381) 2.5 1.6E+02 0.012 7.6 1.4 14 157-170 9-22 (43) No 1 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=2.1e-20 Score=125.66 Aligned_cols=244 Identities=10% Similarity=0.133 Sum_probs=182.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999998788999999-76899644---5899999999999972211------33458899999999997312334 Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIIL-KNQSFAGE---AISHSVLPGIVLSHMAGIP------LEIGAFIAGMICTLSAGYLKEKS 90 (277) Q Consensus 21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~~---alsH~al~Gial~~l~g~~------~~lga~~~~ll~a~li~~l~~r~ 90 (277) .+++.++|...+.-|..... -|..+.+- +++..+-.|++++.+++.. ....++..++..........++. T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (324) T d1l7va_ 60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH 139 (324) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999817988783678754288999999997233225788999999999999999999986146 Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHH-HCC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 43024-4789899999999998632-102--4410345776317534665525789988999999998633431134668 Q gi|254780540|r 91 YFQED-LVLSIVFSGMFAIGIILIL-KVH--SSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP 166 (277) Q Consensus 91 ~~~~d-~~igiv~~~~~algill~s-~~~--~~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~ 166 (277) ..+.. ...|+..+..+.....+.. ..+ ...+...|+.|+....+|+|++......... .......|+++.++.|| T Consensus 140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~lgd 218 (324) T d1l7va_ 140 LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVL-LWICCQSRPMNMLALGE 218 (324) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHH-HHHHHCHHHHHHHHHCH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH T ss_conf 88136778899999999999999999547999999999976500445320357788751899-99999984466553036 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH- Q ss_conf 8997618874235669999999999999989899999999998778998530888999999999999999999999999- Q gi|254780540|r 167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF- 245 (277) Q Consensus 167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~- 245 (277) |.|+..|+|+++.+...+...++.++.++..+|.+.+.++ +.|+.+.+...+++++.++.|.++|.......-.++-. T Consensus 219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~r~i 297 (324) T d1l7va_ 219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLA 297 (324) T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8887068666777799999999999999972364455587-579999986077751799999999999999999999760 Q ss_pred ---HCCCCHHHHHHHHHHHHHHHH Q ss_conf ---578818999999999999999 Q gi|254780540|r 246 ---INSAAAPTVVILMAIFFVVVY 266 (277) Q Consensus 246 ---~~~p~g~~Iv~~~~~~~~~~~ 266 (277) .++|.|-.+.++.+.+|+.-. T Consensus 298 ~~p~eiPvGvitaliG~P~fi~Ll 321 (324) T d1l7va_ 298 LAAAELPIGVVTATLGAPVFIWLL 321 (324) T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 466563299999999999999999 No 2 >d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage P21 [TaxId: 10711]} Probab=12.46 E-value=2.4 Score=17.49 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 768996445899999 Q gi|254780540|r 41 KNQSFAGEAISHSVL 55 (277) Q Consensus 41 rr~~~~~~alsH~al 55 (277) ||.+|.|-++||+++ T Consensus 88 K~~AFaGs~iSh~~~ 102 (103) T d1td4a_ 88 KANAFAGSALSHAAL 102 (103) T ss_dssp HHTTTTTSEEEEECC T ss_pred HHHHHHCCCCCCCCC T ss_conf 766651684321348 No 3 >d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=10.14 E-value=31 Score=11.49 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=10.4 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 441034577631753 Q gi|254780540|r 118 SSLHFSHILLGDMLG 132 (277) Q Consensus 118 ~~~~l~~~LfG~il~ 132 (277) +..++..+|||||-. T Consensus 6 ~~~~LtGfLFGNId~ 20 (67) T d1tbaa_ 6 NGLDLTGILFGNIDS 20 (67) T ss_dssp CSCCCTTHHHHCEET T ss_pred CCCCEEEEEECCCCC T ss_conf 771101224414277 No 4 >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Probab=4.65 E-value=77 Score=9.39 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.4 Q ss_pred CCCHHHHHHHCCCCCHH Q ss_conf 46688997618874235 Q gi|254780540|r 163 IFDPMHAHSMQIPIKLL 179 (277) Q Consensus 163 sfD~~~A~~~Gi~v~~~ 179 (277) +|||+.|+..|+++..+ T Consensus 96 ~~~~~~a~~~Gvd~d~i 112 (268) T d1xp8a1 96 ALDPVYARALGVNTDEL 112 (268) T ss_dssp CCCHHHHHHTTCCGGGC T ss_pred CCCHHHHHHHCCCCHHE T ss_conf 58999999828981237 No 5 >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=4.45 E-value=81 Score=9.26 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=20.3 Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 34668899761887423566999999 Q gi|254780540|r 162 MIFDPMHAHSMQIPIKLLHYNFLIVL 187 (277) Q Consensus 162 ~sfD~~~A~~~Gi~v~~~~~~~~~li 187 (277) -.-|++.|+..|++.+-.+=.++.+- T Consensus 33 evtDe~iA~~tgi~in~VRk~Ly~L~ 58 (88) T d1q1ha_ 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (88) T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 67899999996996999999999998 No 6 >d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=4.23 E-value=87 Score=9.11 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=11.1 Q ss_pred HHHHHCCCCHHHHHHH Q ss_conf 3431134668899761 Q gi|254780540|r 157 NDLLLMIFDPMHAHSM 172 (277) Q Consensus 157 r~l~~~sfD~~~A~~~ 172 (277) .+++++.||++.|+.. T Consensus 34 dqLvYMGF~~~~Ae~A 49 (83) T d1vega_ 34 NQLVYMGFDTVVAEAA 49 (83) T ss_dssp HHHHHHSCCHHHHHHH T ss_pred HHHHHHCCCHHHHHHH T ss_conf 9999834238889999 No 7 >d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543) {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.50 E-value=71 Score=9.58 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 996445899999999 Q gi|254780540|r 44 SFAGEAISHSVLPGI 58 (277) Q Consensus 44 ~~~~~alsH~al~Gi 58 (277) ..+-.|+.|++|+|- T Consensus 21 ~iI~nAL~~~~L~G~ 35 (141) T d1ugja_ 21 FIIHNALSHCCLAGK 35 (141) T ss_dssp HHHHHHHHHTTTCSS T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998527885 No 8 >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=3.16 E-value=1.2e+02 Score=8.27 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=11.9 Q ss_pred CCCHHHHHHHCCCCCH Q ss_conf 4668899761887423 Q gi|254780540|r 163 IFDPMHAHSMQIPIKL 178 (277) Q Consensus 163 sfD~~~A~~~Gi~v~~ 178 (277) +|||+.|+..|+++.. T Consensus 99 ~~~~e~a~~~GvD~d~ 114 (269) T d1mo6a1 99 ALDPDYAKKLGVDTDS 114 (269) T ss_dssp CCCHHHHHHHTCCGGG T ss_pred CCCHHHHHHHCCCHHH T ss_conf 6799999980998899 No 9 >d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=2.59 E-value=1.6e+02 Score=7.71 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=0.0 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 853088899999999999999999999999957881 Q gi|254780540|r 215 FLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAA 250 (277) Q Consensus 215 ~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~~~~p~ 250 (277) +.+++..-+...+-..+..+.+..+++++.++|-+| T Consensus 223 ~~vA~viDR~~l~vF~~~~~i~t~~i~l~~~~~~~p 258 (260) T d1oede_ 223 VLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQVP 258 (260) T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999999999999999999935248998 No 10 >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Probab=2.52 E-value=1.6e+02 Score=7.64 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=0.0 Q ss_pred HHHHHCCCCHHHHH Q ss_conf 34311346688997 Q gi|254780540|r 157 NDLLLMIFDPMHAH 170 (277) Q Consensus 157 r~l~~~sfD~~~A~ 170 (277) +++.-..|||+.|+ T Consensus 9 ~eL~~MGF~e~~A~ 22 (43) T d2g3qa1 9 EELSGMGFTEEEAH 22 (43) T ss_dssp HHHHTTTSCHHHHH T ss_pred HHHHHCCCCHHHHH T ss_conf 99995587889999 Done!