Query gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 277
No_of_seqs 131 out of 2480
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 09:44:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780540.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 99.9 2.1E-20 1.5E-24 125.7 19.1 244 21-266 60-321 (324)
2 d1td4a_ b.85.2.1 (A:) Head dec 12.5 2.4 0.00018 17.5 -4.8 15 41-55 88-102 (103)
3 d1tbaa_ a.15.1.1 (A:) TAF(II)2 10.1 31 0.0023 11.5 0.3 15 118-132 6-20 (67)
4 d1xp8a1 c.37.1.11 (A:15-282) R 4.6 77 0.0056 9.4 1.7 17 163-179 96-112 (268)
5 d1q1ha_ a.4.5.41 (A:) Transcri 4.5 81 0.0059 9.3 1.8 26 162-187 33-58 (88)
6 d1vega_ a.5.2.1 (A:) NEDD8 ult 4.2 87 0.0063 9.1 1.3 16 157-172 34-49 (83)
7 d1ugja_ b.41.1.3 (A:) RIKEN cD 3.5 71 0.0052 9.6 -1.0 15 44-58 21-35 (141)
8 d1mo6a1 c.37.1.11 (A:1-269) Re 3.2 1.2E+02 0.009 8.3 1.7 16 163-178 99-114 (269)
9 d1oede_ f.36.1.1 (E:) Acetylch 2.6 1.6E+02 0.011 7.7 2.6 36 215-250 223-258 (260)
10 d2g3qa1 a.5.2.1 (A:1339-1381) 2.5 1.6E+02 0.012 7.6 1.4 14 157-170 9-22 (43)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=2.1e-20 Score=125.66 Aligned_cols=244 Identities=10% Similarity=0.133 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998788999999-76899644---5899999999999972211------33458899999999997312334
Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIIL-KNQSFAGE---AISHSVLPGIVLSHMAGIP------LEIGAFIAGMICTLSAGYLKEKS 90 (277)
Q Consensus 21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~~---alsH~al~Gial~~l~g~~------~~lga~~~~ll~a~li~~l~~r~ 90 (277)
.+++.++|...+.-|..... -|..+.+- +++..+-.|++++.+++.. ....++..++..........++.
T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (324)
T d1l7va_ 60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH 139 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999817988783678754288999999997233225788999999999999999999986146
Q ss_pred CCCHH-HHHHHHHHHHHHHHHHHHH-HCC--CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 43024-4789899999999998632-102--4410345776317534665525789988999999998633431134668
Q gi|254780540|r 91 YFQED-LVLSIVFSGMFAIGIILIL-KVH--SSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDP 166 (277)
Q Consensus 91 ~~~~d-~~igiv~~~~~algill~s-~~~--~~~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD~ 166 (277)
..+.. ...|+..+..+.....+.. ..+ ...+...|+.|+....+|+|++......... .......|+++.++.||
T Consensus 140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~lgd 218 (324)
T d1l7va_ 140 LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVL-LWICCQSRPMNMLALGE 218 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHH-HHHHHCHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH
T ss_conf 88136778899999999999999999547999999999976500445320357788751899-99999984466553036
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8997618874235669999999999999989899999999998778998530888999999999999999999999999-
Q gi|254780540|r 167 MHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF- 245 (277)
Q Consensus 167 ~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~- 245 (277)
|.|+..|+|+++.+...+...++.++.++..+|.+.+.++ +.|+.+.+...+++++.++.|.++|.......-.++-.
T Consensus 219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~r~i 297 (324)
T d1l7va_ 219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLA 297 (324)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8887068666777799999999999999972364455587-579999986077751799999999999999999999760
Q ss_pred ---HCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---578818999999999999999
Q gi|254780540|r 246 ---INSAAAPTVVILMAIFFVVVY 266 (277)
Q Consensus 246 ---~~~p~g~~Iv~~~~~~~~~~~ 266 (277)
.++|.|-.+.++.+.+|+.-.
T Consensus 298 ~~p~eiPvGvitaliG~P~fi~Ll 321 (324)
T d1l7va_ 298 LAAAELPIGVVTATLGAPVFIWLL 321 (324)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 466563299999999999999999
No 2
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Probab=12.46 E-value=2.4 Score=17.49 Aligned_cols=15 Identities=53% Similarity=0.877 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 768996445899999
Q gi|254780540|r 41 KNQSFAGEAISHSVL 55 (277)
Q Consensus 41 rr~~~~~~alsH~al 55 (277)
||.+|.|-++||+++
T Consensus 88 K~~AFaGs~iSh~~~ 102 (103)
T d1td4a_ 88 KANAFAGSALSHAAL 102 (103)
T ss_dssp HHTTTTTSEEEEECC
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 766651684321348
No 3
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.14 E-value=31 Score=11.49 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 441034577631753
Q gi|254780540|r 118 SSLHFSHILLGDMLG 132 (277)
Q Consensus 118 ~~~~l~~~LfG~il~ 132 (277)
+..++..+|||||-.
T Consensus 6 ~~~~LtGfLFGNId~ 20 (67)
T d1tbaa_ 6 NGLDLTGILFGNIDS 20 (67)
T ss_dssp CSCCCTTHHHHCEET
T ss_pred CCCCEEEEEECCCCC
T ss_conf 771101224414277
No 4
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.65 E-value=77 Score=9.39 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.4
Q ss_pred CCCHHHHHHHCCCCCHH
Q ss_conf 46688997618874235
Q gi|254780540|r 163 IFDPMHAHSMQIPIKLL 179 (277)
Q Consensus 163 sfD~~~A~~~Gi~v~~~ 179 (277)
+|||+.|+..|+++..+
T Consensus 96 ~~~~~~a~~~Gvd~d~i 112 (268)
T d1xp8a1 96 ALDPVYARALGVNTDEL 112 (268)
T ss_dssp CCCHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHCCCCHHE
T ss_conf 58999999828981237
No 5
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.45 E-value=81 Score=9.26 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 34668899761887423566999999
Q gi|254780540|r 162 MIFDPMHAHSMQIPIKLLHYNFLIVL 187 (277)
Q Consensus 162 ~sfD~~~A~~~Gi~v~~~~~~~~~li 187 (277)
-.-|++.|+..|++.+-.+=.++.+-
T Consensus 33 evtDe~iA~~tgi~in~VRk~Ly~L~ 58 (88)
T d1q1ha_ 33 EMTDEEIANQLNIKVNDVRKKLNLLE 58 (88)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 67899999996996999999999998
No 6
>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.23 E-value=87 Score=9.11 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=11.1
Q ss_pred HHHHHCCCCHHHHHHH
Q ss_conf 3431134668899761
Q gi|254780540|r 157 NDLLLMIFDPMHAHSM 172 (277)
Q Consensus 157 r~l~~~sfD~~~A~~~ 172 (277)
.+++++.||++.|+..
T Consensus 34 dqLvYMGF~~~~Ae~A 49 (83)
T d1vega_ 34 NQLVYMGFDTVVAEAA 49 (83)
T ss_dssp HHHHHHSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH
T ss_conf 9999834238889999
No 7
>d1ugja_ b.41.1.3 (A:) RIKEN cDNA 2310057j16 protein (KIAA1543) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.50 E-value=71 Score=9.58 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 996445899999999
Q gi|254780540|r 44 SFAGEAISHSVLPGI 58 (277)
Q Consensus 44 ~~~~~alsH~al~Gi 58 (277)
..+-.|+.|++|+|-
T Consensus 21 ~iI~nAL~~~~L~G~ 35 (141)
T d1ugja_ 21 FIIHNALSHCCLAGK 35 (141)
T ss_dssp HHHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999998527885
No 8
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.16 E-value=1.2e+02 Score=8.27 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=11.9
Q ss_pred CCCHHHHHHHCCCCCH
Q ss_conf 4668899761887423
Q gi|254780540|r 163 IFDPMHAHSMQIPIKL 178 (277)
Q Consensus 163 sfD~~~A~~~Gi~v~~ 178 (277)
+|||+.|+..|+++..
T Consensus 99 ~~~~e~a~~~GvD~d~ 114 (269)
T d1mo6a1 99 ALDPDYAKKLGVDTDS 114 (269)
T ss_dssp CCCHHHHHHHTCCGGG
T ss_pred CCCHHHHHHHCCCHHH
T ss_conf 6799999980998899
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.59 E-value=1.6e+02 Score=7.71 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 853088899999999999999999999999957881
Q gi|254780540|r 215 FLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAA 250 (277)
Q Consensus 215 ~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~~~~p~ 250 (277)
+.+++..-+...+-..+..+.+..+++++.++|-+|
T Consensus 223 ~~vA~viDR~~l~vF~~~~~i~t~~i~l~~~~~~~p 258 (260)
T d1oede_ 223 VLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQVP 258 (260)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999999999999935248998
No 10
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=2.52 E-value=1.6e+02 Score=7.64 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHCCCCHHHHH
Q ss_conf 34311346688997
Q gi|254780540|r 157 NDLLLMIFDPMHAH 170 (277)
Q Consensus 157 r~l~~~sfD~~~A~ 170 (277)
+++.-..|||+.|+
T Consensus 9 ~eL~~MGF~e~~A~ 22 (43)
T d2g3qa1 9 EELSGMGFTEEEAH 22 (43)
T ss_dssp HHHHTTTSCHHHHH
T ss_pred HHHHHCCCCHHHHH
T ss_conf 99995587889999
Done!