RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] (277 letters) >gnl|CDD|109985 pfam00950, ABC-3, ABC 3 transport family. Length = 258 Score = 165 bits (420), Expect = 1e-41 Identities = 89/257 (34%), Positives = 166/257 (64%), Gaps = 1/257 (0%) Query: 14 FPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAF 73 + +Q + + +++V + +L F++L+ QS G+A+SH+VLPG+ L+ GI IGAF Sbjct: 2 YEFMQRALLASILVSLACGILGSFLVLRRQSLMGDALSHAVLPGVALAFFLGINPLIGAF 61 Query: 74 IAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKV-HSSLHFSHILLGDMLG 132 + G+I ++ GYL+ S +ED + IVFS A+G++LI + S++ H L G++LG Sbjct: 62 LFGLIAAVAIGYLRRNSRLKEDTAIGIVFSSFLALGLLLISLIKGSAVDLDHYLFGNILG 121 Query: 133 ISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIV 192 IS+ D+I A I + L+L +LLL+ FDP HA + +P++ L+ LI+L+L IV Sbjct: 122 ISQEDLIQIAIITAIILLLLLLFWKELLLITFDPDHAKVIGLPVQFLYLLLLILLALTIV 181 Query: 193 ISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAP 252 ++++++G IL A+L+ P ATA LL++ +M+L++ I +V ++ G+ +S++ ++ P Sbjct: 182 VAMQAVGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYFDTPTGP 241 Query: 253 TVVILMAIFFVVVYAYS 269 +V++ + F++ +A++ Sbjct: 242 VIVLIATLLFLISFAFA 258 >gnl|CDD|31305 COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]. Length = 274 Score = 141 bits (357), Expect = 2e-34 Identities = 90/274 (32%), Positives = 171/274 (62%), Gaps = 1/274 (0%) Query: 4 FLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHM 63 L +L + +QN+ + ++++ I +L F++L+ S G+A+SH+VLPG+ L + Sbjct: 1 MLELLLELFQYDFMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFL 60 Query: 64 AGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKV-HSSLHF 122 GI +GAFI G++ L GYL+ +S +ED + IVFS A+G++L+ V S + Sbjct: 61 LGINPLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGIVFSSGLALGLVLLSLVPSSRVDL 120 Query: 123 SHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYN 182 H L GD+L +S+SD++ A + + L+L +LLL+ FDP A + + ++LLHY Sbjct: 121 MHYLFGDILAVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEFARVLGLNVRLLHYL 180 Query: 183 FLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYI 242 L++L+L IV ++K++G +L A+L++P ATA LL+K M++++V+I ++ +++G+Y+ Sbjct: 181 LLVLLALTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYL 240 Query: 243 SFFINSAAAPTVVILMAIFFVVVYAYSIIINKRT 276 S++++ + P +V++ A+ F++ + + Sbjct: 241 SYYLDLPSGPAIVLIAALLFLLSFLFGPKKGVLA 274 >gnl|CDD|119348 cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.. Length = 261 Score = 86.8 bits (216), Expect = 6e-18 Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 13/262 (4%) Query: 17 IQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGI---PLEIGAF 73 + + ++ + + ++L + S + ISH L G+VL+ + GI +GAF Sbjct: 1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAF 60 Query: 74 IAGMICTLSAGYLKEKSYFQ----EDLVLSIVFSGMFAIGIILILKVHSSLHFS--HILL 127 ++ L S + +++ IV S F+ G+ILI + L Sbjct: 61 AFAGALAIALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLF 120 Query: 128 GDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVL 187 G +LG++ D++ + + L+L L L+ FD A S+ I + LL L+++ Sbjct: 121 GSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLV 180 Query: 188 SLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFI- 246 +L++V ++ +G+IL L+ P L + H ++ LS ++ + L+G +S + Sbjct: 181 ALLVVAAVALVGVIL-FVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239 Query: 247 --NSAAAPTVVILMAIFFVVVY 266 P +L A +F+ + Sbjct: 240 PSELPVGPVTALLGAPYFLYLL 261 >gnl|CDD|144573 pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system. Length = 312 Score = 30.2 bits (69), Expect = 0.63 Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 2/173 (1%) Query: 96 LVLSIVFSGMFAIGIILILKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILK 155 + +S +FS ++L+ + LLG + G S SD++ I + L+L Sbjct: 138 IAVSALFSA-LTSLLLLLADPEALQSILFWLLGSLSGASWSDVLILLPLLLIGLLLLLLL 196 Query: 156 KNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAF 215 L L+ A S+ + + + L++ +L+ ++ +G I ++V P Sbjct: 197 ARKLNLLALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVGLIV-PHIARL 255 Query: 216 LLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAY 268 L+ +H ++ LS +I + L+ ++ + + V I+ A+ + Y Sbjct: 256 LVGANHRRLLPLSALIGALLLLLADLLARTLLAPIELPVGIVTALIGAPFFIY 308 >gnl|CDD|111273 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalysed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1). Length = 817 Score = 30.1 bits (68), Expect = 0.75 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 218 SKHHTTMILLSVIISVVCTLVGIYISF-FINSAAAPTVVILMAIFFVVVYAYSIII 272 + +L S II +C I++ FINS T I +++ II Sbjct: 741 PRATFKNLLFSEIILPLCLFALQLIAYLFINSQNGSTDTPTNLILRLLIITLIPII 796 >gnl|CDD|30954 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]. Length = 334 Score = 29.5 bits (66), Expect = 0.98 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 1/179 (0%) Query: 97 VLSIVFSGMFAIGIILILKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156 LS +F + ++ +IL + LLG + G + SD++ I + L+ Sbjct: 154 ALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLS 213 Query: 157 NDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFL 216 L ++ A S+ I + L L++ SL+ ++ +G I L+ P L Sbjct: 214 RKLNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVG-LIAPHIARLL 272 Query: 217 LSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIIINKR 275 + H ++ LS ++ + L+ ++ I + A V I+ A+ + Y + ++ Sbjct: 273 VGNDHRYLLPLSALLGALLLLLADILARTILAPAEIPVGIVTALIGAPYFIYLLRKKRK 331 >gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]. Length = 862 Score = 27.3 bits (60), Expect = 5.2 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 7/99 (7%) Query: 182 NFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLS------VIISVVC 235 N L + IL P + LLS + ++ ++C Sbjct: 614 NLHNSLRYHTLHVEMLYFAILGPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFILLC 673 Query: 236 TLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIIINK 274 +++ ++ M+ + V+ YS++ Sbjct: 674 LTFSLFMQLLGARPRGNVYMLAMS-LYSVLIIYSLLCAG 711 >gnl|CDD|145462 pfam02322, Cyto_ox_2, Cytochrome oxidase subunit II. This Family consists of cytochrome bd type terminal oxidases that catalyses Quinol dependent, Na+ independent oxygen uptake. Members of this family are integral membrane proteins andi contain a protohaem IX centre B558. One member of the family is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. Length = 327 Score = 26.7 bits (60), Expect = 7.6 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 16/84 (19%) Query: 198 IGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF------------ 245 +ILP ++ LL + L+ ++ V ++G+ +S F Sbjct: 228 WLLILPALPVLAALLAVLLLRLRREGLAFLASGLAFVLVVLGLAVSLFPYILPSSLDPAS 287 Query: 246 ----INSAAAPTVVILMAIFFVVV 265 N+A++P + M I ++ Sbjct: 288 SLTIWNAASSPYTLKFMLIVALIF 311 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.333 0.146 0.415 Gapped Lambda K H 0.267 0.0690 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,380,065 Number of extensions: 196411 Number of successful extensions: 1413 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1353 Number of HSP's successfully gapped: 230 Length of query: 277 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 185 Effective length of database: 4,275,709 Effective search space: 791006165 Effective search space used: 791006165 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 57 (25.8 bits)