RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane
spanning protein (iron transport) [Candidatus Liberibacter asiaticus
str. psy62]
         (277 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.0 bits (64), Expect = 0.72
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 124 HILLG---DMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH 180
            +L     +M+G S+S    TA FA   +S +         +   P    + QI   +  
Sbjct: 152 LLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 211

Query: 181 YN-FLIVLSLIIVISLKSIGIILPPAVLVL-PGATAFLLSKHHTTMILLSVIISVVC 235
              +  V +   +      G  +   +++  PG    L+      +    + + V+ 
Sbjct: 212 MGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLM--KRRQLDARDIKVFVLD 266


>1td4_A Head decoration protein; SHP, viral protein; 1.50A
           {Enterobacteria phage P21} (A:)
          Length = 115

 Score = 25.7 bits (56), Expect = 7.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 41  KNQSFAGEAISHSVLP 56
           K  +FAG A+SH+ LP
Sbjct: 100 KANAFAGSALSHAALP 115


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.146    0.415 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,974,621
Number of extensions: 83239
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 34
Length of query: 277
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 190
Effective length of database: 2,015,014
Effective search space: 382852660
Effective search space used: 382852660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 54 (24.8 bits)