RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane
spanning protein (iron transport) [Candidatus Liberibacter asiaticus
str. psy62]
         (277 letters)



>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid
           protein D) {Bacteriophage P21 [TaxId: 10711]}
          Length = 103

 Score = 25.3 bits (55), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 41  KNQSFAGEAISHSVLP 56
           K  +FAG A+SH+ LP
Sbjct: 88  KANAFAGSALSHAALP 103


>d1xkoa_ d.252.1.1 (A:) Chemotaxis protein CheX {Thermotoga maritima
           [TaxId: 2336]}
          Length = 153

 Score = 24.5 bits (53), Expect = 9.5
 Identities = 9/57 (15%), Positives = 17/57 (29%)

Query: 74  IAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSLHFSHILLGDM 130
           + G+                  LV  I  +G     +I      ++L     ++G M
Sbjct: 21  VLGIEPKTGKPSTVSHIEIPHSLVTVIGITGGIEGSLIYSFSSETALKVVSAMMGGM 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.146    0.415 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,141
Number of extensions: 44489
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 17
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.3 bits)