BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] (277 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] Length = 277 Score = 530 bits (1364), Expect = e-152, Method: Compositional matrix adjust. Identities = 277/277 (100%), Positives = 277/277 (100%) Query: 1 MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL 60 MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL Sbjct: 1 MSSFLHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVL 60 Query: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL 120 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL Sbjct: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSL 120 Query: 121 HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH 180 HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH Sbjct: 121 HFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLH 180 Query: 181 YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI 240 YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI Sbjct: 181 YNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGI 240 Query: 241 YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA 277 YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA Sbjct: 241 YISFFINSAAAPTVVILMAIFFVVVYAYSIIINKRTA 277 >gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 144 bits (363), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 148/253 (58%) Query: 5 LHYVLLPLTFPAIQNSFIITVIVVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMA 64 ++ +L P T+ + + ++ ++ +LS ++ILK S G ISH++ PGIV+ H Sbjct: 2 INQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRL 61 Query: 65 GIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGIILILKVHSSLHFSH 124 IPL +GA I+GM+ T +KE + +ED+ +++V+ ++ + ++ S+++ + Sbjct: 62 NIPLSVGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSAVYVEN 121 Query: 125 ILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFL 184 I LG+ L +S+SD I F + +K D +L+ FD HAHS+ I +KLL F Sbjct: 122 IFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFF 181 Query: 185 IVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISF 244 +L++ IVI +++GI+L A ++ PGATA L+SK T ++ S ++ + +G YIS+ Sbjct: 182 SLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY 241 Query: 245 FINSAAAPTVVIL 257 F++ + +VI+ Sbjct: 242 FLDCSPGGIIVII 254 >gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 260 Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%) Query: 27 VVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAFIAGMICTLSAGYL 86 +V+ L CFII + ++ G+ I+HS L G+ LS + +PL I F+ + +L + Sbjct: 16 IVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQI 75 Query: 87 KEKSYFQEDLVLSIVFSGMFAIG-IILILKVHSSLHFSHILLGDMLGISKSDIITTAFFA 145 ++ D +L ++ ++ +IL + + L GD+L ++ +DI+ Sbjct: 76 QKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIG 135 Query: 146 FISISFLILKKNDLLLMI--FDPMHAHSMQ-IPIKLLHYNFLIVLSLIIVISLKSIGIIL 202 F++I L LL ++ A MQ IKL+ F+++ SL+I +S+K IGI L Sbjct: 136 FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLI---FIMITSLMISVSIKFIGITL 192 Query: 203 PPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFF 262 ++L+LP TA S M +L+ II ++ ++G+Y S ++ + P+++I F Sbjct: 193 ITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLF 252 Query: 263 VVVYAYS 269 ++ + Y Sbjct: 253 ILSFFYK 259 >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 27.7 bits (60), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 61 SHMAGIPLEIGAFIAGMICTLSAGYLKEKSYFQEDLVLSIVFSGMF 106 S + G+ L +GAF AGMI S +S QE L L FS +F Sbjct: 251 SKLFGVSLSLGAFFAGMILAESE---LSQSAAQESLPLRDAFSVLF 293 >gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 24.3 bits (51), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 102 FSGMFAI-GIILILKV--HSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156 F+GM I G +L V + S F +++ M+ S+ D AF+SIS + + Sbjct: 32 FAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDR 89 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.333 0.146 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 171,234 Number of Sequences: 1233 Number of extensions: 7283 Number of successful extensions: 47 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 21 length of query: 277 length of database: 328,796 effective HSP length: 73 effective length of query: 204 effective length of database: 238,787 effective search space: 48712548 effective search space used: 48712548 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 38 (19.2 bits)