Query         gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs    121 out of 549
Neff          4.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:23:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ksi_A Copper amine oxidase;   46.1      13 0.00038   17.4   2.1   68   72-153    29-99  (111)
  2 >3fbk_A RGS3, RGP3, regulator   27.6      40  0.0012   14.4   3.2   43   41-83     12-54  (153)
  3 >1brv_A Protein G, BRSV-G regi  21.0      28 0.00084   15.3   0.4   10  199-208     1-10  (32)
  4 >2r3a_A Histone-lysine N-methy  19.0      20 0.00058   16.3  -0.8   16  173-188    44-59  (195)
  5 >3cfu_A Uncharacterized lipopr  16.6      67   0.002   13.0   6.3   23   48-70      3-25  (159)
  6 >1u5h_A CITE; TIM barrel, stru  15.0      36  0.0011   14.6  -0.2   36   92-127     4-41  (273)
  7 >3ei4_B DNA damage-binding pro  14.8      57  0.0017   13.4   0.8   16  106-121     3-18  (54)
  8 >1l3w_A EP-cadherin, C-cadheri  13.1      82  0.0024   12.4   1.8   31   35-65     53-83  (107)
  9 >3h5t_A Transcriptional regula  12.4      38  0.0011   14.5  -0.7   20   93-112   127-146 (146)
 10 >2c1d_A SOXA; sulfur oxidation  12.4      51  0.0015   13.7  -0.1    9   94-102    35-43  (48)

No 1  
>>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} (A:96-206)
Probab=46.09  E-value=13  Score=17.43  Aligned_cols=68  Identities=13%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             CCCCCEEEEEEEEE--CCCCCCCEEECCCEEEECCCCCCCCCCCE-EEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf             88761699999960--35776314442757520757882338521-4898613478883200000344000000036884
Q gi|254780542|r   72 EAQRIDAFVSISEI--FTDRIVRSIFSGWMFADSPAMNAIDHSIY-DIWLMQCKDPINDSISNSESISKKALSEYSSTDI  148 (210)
Q Consensus        72 e~pe~~Ayl~I~d~--~~~~~~~~IF~GWMfASSPsLnalEHPvY-DIWvl~Ck~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      +.+...++..-+-.  ...++.+.++++|||..+|.-|..-||+= =+=+++..              .+.+-+.++.+.
T Consensus        29 Gl~~~~V~~dpw~~G~~g~~~~rRl~~~~~y~r~~~~N~Ya~PieG~~~vvDl~--------------~~~Vi~i~D~~~   94 (111)
T 1ksi_A           29 GLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLD--------------LMKIVEYHDRDI   94 (111)
T ss_dssp             TCCGGGEEEEEECCCCCSCSCCCCEEEEEEEECSSCSCGGGSEECSEEEEEETT--------------TTEEEEEEECCC
T ss_pred             CCCHHHEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECC--------------EEEEEEEECCCC
T ss_conf             998556499345456667777732689998982788860336767722688752--------------468998406886


Q ss_pred             CCCCC
Q ss_conf             23571
Q gi|254780542|r  149 TSQGS  153 (210)
Q Consensus       149 ~~~~~  153 (210)
                      ..+|.
T Consensus        95 ~piP~   99 (111)
T 1ksi_A           95 EAVPT   99 (111)
T ss_dssp             CCCCC
T ss_pred             CCCCC
T ss_conf             56787


No 2  
>>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} (A:)
Probab=27.60  E-value=40  Score=14.38  Aligned_cols=43  Identities=16%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             EEEEEEEECCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf             0489997079858963279999840168988887616999999
Q gi|254780542|r   41 RVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSIS   83 (210)
Q Consensus        41 kvs~ieI~vGe~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~   83 (210)
                      ....+.+.+.....-+.|.|++.+|..-+..+......|+.|.
T Consensus        12 ~~g~~~~~~~~~~~~~~L~V~i~~a~~L~~~~~~~~dpyv~i~   54 (153)
T 3fbk_A           12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKIS   54 (153)
T ss_dssp             -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEE
T ss_pred             CEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf             2589999999988899999999988589999999826489999


No 3  
>>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:)
Probab=21.04  E-value=28  Score=15.30  Aligned_cols=10  Identities=60%  Similarity=0.860  Sum_probs=5.3

Q ss_pred             CCCCCCCEEE
Q ss_conf             7223452152
Q gi|254780542|r  199 NEQDHNDVQI  208 (210)
Q Consensus       199 ~~~~~~~~~~  208 (210)
                      |.||||+.|+
T Consensus         1 nhQDhnn~Qt   10 (32)
T 1brv_A            1 NHQDHNNFQT   10 (32)
T ss_pred             CCCCCCCCCC
T ss_conf             9634465430


No 4  
>>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} (A:1-53,A:113-170,A:217-300)
Probab=19.02  E-value=20  Score=16.28  Aligned_cols=16  Identities=38%  Similarity=0.573  Sum_probs=6.0

Q ss_pred             CCCCCEEEEEEEEHHH
Q ss_conf             1001100110025777
Q gi|254780542|r  173 LENNLSMDLKGRPIQE  188 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~  188 (210)
                      |+++-++||+|+||-|
T Consensus        44 ~~~~~~~~~~g~~I~E   59 (195)
T 2r3a_A           44 IFVENTVDLEGTPIYE   59 (195)
T ss_dssp             EEEECSSSCCTCCEEC
T ss_pred             CEEEECCCCCCCCEEE
T ss_conf             1788699888886651


No 5  
>>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} (A:)
Probab=16.57  E-value=67  Score=12.96  Aligned_cols=23  Identities=9%  Similarity=-0.000  Sum_probs=18.7

Q ss_pred             ECCCEEEECCEEEEEEECCCCCC
Q ss_conf             07985896327999984016898
Q gi|254780542|r   48 EINQSAQFGSLIIKPMVCYSRDD   70 (210)
Q Consensus        48 ~vGe~~~FG~L~I~v~~C~~~~p   70 (210)
                      ++|++++.|+++|+|..-.....
T Consensus         3 kiGetv~~~~~~vTV~~v~~~~~   25 (159)
T 3cfu_A            3 KIGETFKAGHTNFTVNKVDRVQK   25 (159)
T ss_dssp             CTTCEEEETTEEEEEEEEEEECS
T ss_pred             CCCCEEEECCEEEEEEEEEECCC
T ss_conf             24754898999999999997257


No 6  
>>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} (A:)
Probab=14.96  E-value=36  Score=14.60  Aligned_cols=36  Identities=25%  Similarity=0.552  Sum_probs=29.2

Q ss_pred             CEEECCCEEE--ECCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             1444275752--07578823385214898613478883
Q gi|254780542|r   92 RSIFSGWMFA--DSPAMNAIDHSIYDIWLMQCKDPIND  127 (210)
Q Consensus        92 ~~IF~GWMfA--SSPsLnalEHPvYDIWvl~Ck~p~~~  127 (210)
                      ..++..|+|-  +.+.+-..-+.-||..+++|+..+..
T Consensus         4 ~~~~gs~l~vPa~~~~~~~~a~~g~D~viiDlEdav~~   41 (273)
T 1u5h_A            4 RAAGPGWLFCPADAPEAFAAAAAAADVVILDLEDGVAE   41 (273)
T ss_dssp             TTSCSEEEEEETTCGGGHHHHHHHCSEEEEESSTTSCG
T ss_pred             CCCCCEEEECCCCCHHHHCCCCCCCCEEEEECCCCCCH
T ss_conf             87887389816998677614577897899967478986


No 7  
>>3ei4_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, alternative splicing, disease mutation, DNA repair; HET: DNA; 3.30A {Homo sapiens} (B:347-400)
Probab=14.83  E-value=57  Score=13.41  Aligned_cols=16  Identities=19%  Similarity=0.312  Sum_probs=11.1

Q ss_pred             CCCCCCCCEEEEEEEC
Q ss_conf             8823385214898613
Q gi|254780542|r  106 MNAIDHSIYDIWLMQC  121 (210)
Q Consensus       106 LnalEHPvYDIWvl~C  121 (210)
                      +.|-=||.||+-|++-
T Consensus         3 ikAtWhP~~dliVvGR   18 (54)
T 3ei4_B            3 IKAAWHPRYNLIVVGR   18 (54)
T ss_dssp             CCCEECSSSSCEEEEC
T ss_pred             EEEEECCCCCEEEEEE
T ss_conf             8999999999999997


No 8  
>>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ectodomain, metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} (A:440-546)
Probab=13.11  E-value=82  Score=12.38  Aligned_cols=31  Identities=6%  Similarity=-0.138  Sum_probs=13.1

Q ss_pred             EECCCCEEEEEEEECCCEEEECCEEEEEEEC
Q ss_conf             8343450489997079858963279999840
Q gi|254780542|r   35 MDKITGRVLTFDVEINQSAQFGSLIIKPMVC   65 (210)
Q Consensus        35 LDKITakvs~ieI~vGe~~~FG~L~I~v~~C   65 (210)
                      +|..||.+....-.--+......|.|.+..+
T Consensus        53 id~~~g~i~~~~~lD~e~~~~y~l~v~a~D~   83 (107)
T 1l3w_A           53 ELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA   83 (107)
T ss_dssp             CBCTTSSEEEEBCSSCCCSSCBCCEEECCSS
T ss_pred             EECCCCEEEEEECCCCCCCCEEEEEEEEEEC
T ss_conf             9789878999867986677589999999989


No 9  
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320)
Probab=12.44  E-value=38  Score=14.51  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=14.9

Q ss_pred             EEECCCEEEECCCCCCCCCC
Q ss_conf             44427575207578823385
Q gi|254780542|r   93 SIFSGWMFADSPAMNAIDHS  112 (210)
Q Consensus        93 ~IF~GWMfASSPsLnalEHP  112 (210)
                      .-|+|.-++.+|.|+++++|
T Consensus       127 i~fd~~~~a~~p~lTtI~qP  146 (146)
T 3h5t_A          127 TGFDGTHMALARDLTTVIQP  146 (146)
T ss_dssp             EEEECCHHHHHTTCCEEECC
T ss_pred             EEECCCHHHHCCCCCEEEEC
T ss_conf             99896589948998199839


No 10 
>>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans} (A:1-48)
Probab=12.42  E-value=51  Score=13.71  Aligned_cols=9  Identities=67%  Similarity=1.549  Sum_probs=0.0

Q ss_pred             EECCCEEEE
Q ss_conf             442757520
Q gi|254780542|r   94 IFSGWMFAD  102 (210)
Q Consensus        94 IF~GWMfAS  102 (210)
                      |++||-|-+
T Consensus        35 v~SGW~FR~   43 (48)
T 2c1d_A           35 IYSGWHFRD   43 (48)
T ss_dssp             EECGGGGSC
T ss_pred             EEECCCCCC
T ss_conf             122321388


Done!