Query gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 210 No_of_seqs 121 out of 549 Neff 4.0 Searched_HMMs 33803 Date Wed Jun 1 16:23:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ksi_A Copper amine oxidase; 46.1 13 0.00038 17.4 2.1 68 72-153 29-99 (111) 2 >3fbk_A RGS3, RGP3, regulator 27.6 40 0.0012 14.4 3.2 43 41-83 12-54 (153) 3 >1brv_A Protein G, BRSV-G regi 21.0 28 0.00084 15.3 0.4 10 199-208 1-10 (32) 4 >2r3a_A Histone-lysine N-methy 19.0 20 0.00058 16.3 -0.8 16 173-188 44-59 (195) 5 >3cfu_A Uncharacterized lipopr 16.6 67 0.002 13.0 6.3 23 48-70 3-25 (159) 6 >1u5h_A CITE; TIM barrel, stru 15.0 36 0.0011 14.6 -0.2 36 92-127 4-41 (273) 7 >3ei4_B DNA damage-binding pro 14.8 57 0.0017 13.4 0.8 16 106-121 3-18 (54) 8 >1l3w_A EP-cadherin, C-cadheri 13.1 82 0.0024 12.4 1.8 31 35-65 53-83 (107) 9 >3h5t_A Transcriptional regula 12.4 38 0.0011 14.5 -0.7 20 93-112 127-146 (146) 10 >2c1d_A SOXA; sulfur oxidation 12.4 51 0.0015 13.7 -0.1 9 94-102 35-43 (48) No 1 >>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} (A:96-206) Probab=46.09 E-value=13 Score=17.43 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=42.5 Q ss_pred CCCCCEEEEEEEEE--CCCCCCCEEECCCEEEECCCCCCCCCCCE-EEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCC Q ss_conf 88761699999960--35776314442757520757882338521-4898613478883200000344000000036884 Q gi|254780542|r 72 EAQRIDAFVSISEI--FTDRIVRSIFSGWMFADSPAMNAIDHSIY-DIWLMQCKDPINDSISNSESISKKALSEYSSTDI 148 (210) Q Consensus 72 e~pe~~Ayl~I~d~--~~~~~~~~IF~GWMfASSPsLnalEHPvY-DIWvl~Ck~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (210) +.+...++..-+-. ...++.+.++++|||..+|.-|..-||+= =+=+++.. .+.+-+.++.+. T Consensus 29 Gl~~~~V~~dpw~~G~~g~~~~rRl~~~~~y~r~~~~N~Ya~PieG~~~vvDl~--------------~~~Vi~i~D~~~ 94 (111) T 1ksi_A 29 GLNLSEIVCSSFTMGWFGEEKNVRTVRLDCFMKESTVNIYVRPITGITIVADLD--------------LMKIVEYHDRDI 94 (111) T ss_dssp TCCGGGEEEEEECCCCCSCSCCCCEEEEEEEECSSCSCGGGSEECSEEEEEETT--------------TTEEEEEEECCC T ss_pred CCCHHHEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECC--------------EEEEEEEECCCC T ss_conf 998556499345456667777732689998982788860336767722688752--------------468998406886 Q ss_pred CCCCC Q ss_conf 23571 Q gi|254780542|r 149 TSQGS 153 (210) Q Consensus 149 ~~~~~ 153 (210) ..+|. T Consensus 95 ~piP~ 99 (111) T 1ksi_A 95 EAVPT 99 (111) T ss_dssp CCCCC T ss_pred CCCCC T ss_conf 56787 No 2 >>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} (A:) Probab=27.60 E-value=40 Score=14.38 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=32.5 Q ss_pred EEEEEEEECCCEEEECCEEEEEEECCCCCCCCCCCCEEEEEEE Q ss_conf 0489997079858963279999840168988887616999999 Q gi|254780542|r 41 RVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSIS 83 (210) Q Consensus 41 kvs~ieI~vGe~~~FG~L~I~v~~C~~~~p~e~pe~~Ayl~I~ 83 (210) ....+.+.+.....-+.|.|++.+|..-+..+......|+.|. T Consensus 12 ~~g~~~~~~~~~~~~~~L~V~i~~a~~L~~~~~~~~dpyv~i~ 54 (153) T 3fbk_A 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKIS 54 (153) T ss_dssp -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEE T ss_pred CEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEE T ss_conf 2589999999988899999999988589999999826489999 No 3 >>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} (A:) Probab=21.04 E-value=28 Score=15.30 Aligned_cols=10 Identities=60% Similarity=0.860 Sum_probs=5.3 Q ss_pred CCCCCCCEEE Q ss_conf 7223452152 Q gi|254780542|r 199 NEQDHNDVQI 208 (210) Q Consensus 199 ~~~~~~~~~~ 208 (210) |.||||+.|+ T Consensus 1 nhQDhnn~Qt 10 (32) T 1brv_A 1 NHQDHNNFQT 10 (32) T ss_pred CCCCCCCCCC T ss_conf 9634465430 No 4 >>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} (A:1-53,A:113-170,A:217-300) Probab=19.02 E-value=20 Score=16.28 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=6.0 Q ss_pred CCCCCEEEEEEEEHHH Q ss_conf 1001100110025777 Q gi|254780542|r 173 LENNLSMDLKGRPIQE 188 (210) Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (210) |+++-++||+|+||-| T Consensus 44 ~~~~~~~~~~g~~I~E 59 (195) T 2r3a_A 44 IFVENTVDLEGTPIYE 59 (195) T ss_dssp EEEECSSSCCTCCEEC T ss_pred CEEEECCCCCCCCEEE T ss_conf 1788699888886651 No 5 >>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} (A:) Probab=16.57 E-value=67 Score=12.96 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=18.7 Q ss_pred ECCCEEEECCEEEEEEECCCCCC Q ss_conf 07985896327999984016898 Q gi|254780542|r 48 EINQSAQFGSLIIKPMVCYSRDD 70 (210) Q Consensus 48 ~vGe~~~FG~L~I~v~~C~~~~p 70 (210) ++|++++.|+++|+|..-..... T Consensus 3 kiGetv~~~~~~vTV~~v~~~~~ 25 (159) T 3cfu_A 3 KIGETFKAGHTNFTVNKVDRVQK 25 (159) T ss_dssp CTTCEEEETTEEEEEEEEEEECS T ss_pred CCCCEEEECCEEEEEEEEEECCC T ss_conf 24754898999999999997257 No 6 >>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} (A:) Probab=14.96 E-value=36 Score=14.60 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=29.2 Q ss_pred CEEECCCEEE--ECCCCCCCCCCCEEEEEEECCCCCCC Q ss_conf 1444275752--07578823385214898613478883 Q gi|254780542|r 92 RSIFSGWMFA--DSPAMNAIDHSIYDIWLMQCKDPIND 127 (210) Q Consensus 92 ~~IF~GWMfA--SSPsLnalEHPvYDIWvl~Ck~p~~~ 127 (210) ..++..|+|- +.+.+-..-+.-||..+++|+..+.. T Consensus 4 ~~~~gs~l~vPa~~~~~~~~a~~g~D~viiDlEdav~~ 41 (273) T 1u5h_A 4 RAAGPGWLFCPADAPEAFAAAAAAADVVILDLEDGVAE 41 (273) T ss_dssp TTSCSEEEEEETTCGGGHHHHHHHCSEEEEESSTTSCG T ss_pred CCCCCEEEECCCCCHHHHCCCCCCCCEEEEECCCCCCH T ss_conf 87887389816998677614577897899967478986 No 7 >>3ei4_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, alternative splicing, disease mutation, DNA repair; HET: DNA; 3.30A {Homo sapiens} (B:347-400) Probab=14.83 E-value=57 Score=13.41 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=11.1 Q ss_pred CCCCCCCCEEEEEEEC Q ss_conf 8823385214898613 Q gi|254780542|r 106 MNAIDHSIYDIWLMQC 121 (210) Q Consensus 106 LnalEHPvYDIWvl~C 121 (210) +.|-=||.||+-|++- T Consensus 3 ikAtWhP~~dliVvGR 18 (54) T 3ei4_B 3 IKAAWHPRYNLIVVGR 18 (54) T ss_dssp CCCEECSSSSCEEEEC T ss_pred EEEEECCCCCEEEEEE T ss_conf 8999999999999997 No 8 >>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ectodomain, metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} (A:440-546) Probab=13.11 E-value=82 Score=12.38 Aligned_cols=31 Identities=6% Similarity=-0.138 Sum_probs=13.1 Q ss_pred EECCCCEEEEEEEECCCEEEECCEEEEEEEC Q ss_conf 8343450489997079858963279999840 Q gi|254780542|r 35 MDKITGRVLTFDVEINQSAQFGSLIIKPMVC 65 (210) Q Consensus 35 LDKITakvs~ieI~vGe~~~FG~L~I~v~~C 65 (210) +|..||.+....-.--+......|.|.+..+ T Consensus 53 id~~~g~i~~~~~lD~e~~~~y~l~v~a~D~ 83 (107) T 1l3w_A 53 ELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 83 (107) T ss_dssp CBCTTSSEEEEBCSSCCCSSCBCCEEECCSS T ss_pred EECCCCEEEEEECCCCCCCCEEEEEEEEEEC T ss_conf 9789878999867986677589999999989 No 9 >>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320) Probab=12.44 E-value=38 Score=14.51 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=14.9 Q ss_pred EEECCCEEEECCCCCCCCCC Q ss_conf 44427575207578823385 Q gi|254780542|r 93 SIFSGWMFADSPAMNAIDHS 112 (210) Q Consensus 93 ~IF~GWMfASSPsLnalEHP 112 (210) .-|+|.-++.+|.|+++++| T Consensus 127 i~fd~~~~a~~p~lTtI~qP 146 (146) T 3h5t_A 127 TGFDGTHMALARDLTTVIQP 146 (146) T ss_dssp EEEECCHHHHHTTCCEEECC T ss_pred EEECCCHHHHCCCCCEEEEC T ss_conf 99896589948998199839 No 10 >>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans} (A:1-48) Probab=12.42 E-value=51 Score=13.71 Aligned_cols=9 Identities=67% Similarity=1.549 Sum_probs=0.0 Q ss_pred EECCCEEEE Q ss_conf 442757520 Q gi|254780542|r 94 IFSGWMFAD 102 (210) Q Consensus 94 IF~GWMfAS 102 (210) |++||-|-+ T Consensus 35 v~SGW~FR~ 43 (48) T 2c1d_A 35 IYSGWHFRD 43 (48) T ss_dssp EECGGGGSC T ss_pred EEECCCCCC T ss_conf 122321388 Done!