Query gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 121 out of 549
Neff 4.0
Searched_HMMs 13730
Date Wed Jun 1 09:27:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780542.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oqea3 d.17.2.1 (A:116-236) C 25.7 17 0.0013 14.2 2.5 29 89-118 50-79 (121)
2 d1pvma3 g.41.13.1 (A:143-178) 17.6 26 0.0019 13.1 1.9 16 112-127 14-33 (36)
3 d1ei5a2 b.61.3.1 (A:418-520) D 13.5 33 0.0024 12.5 1.5 15 114-128 52-66 (103)
4 d1d4ua2 g.39.1.5 (A:1-36) DNA 13.2 33 0.0024 12.4 1.4 23 97-123 12-34 (36)
5 d1odfa_ c.37.1.6 (A:) Hypothet 13.0 29 0.0021 12.8 0.8 23 89-111 148-170 (286)
6 d1w2za3 d.17.2.1 (A:99-206) Co 12.6 35 0.0025 12.3 2.2 33 89-121 50-83 (108)
7 d1s1ma2 c.37.1.10 (A:1-266) CT 11.6 33 0.0024 12.4 0.8 18 114-131 205-222 (266)
8 d1d6za3 d.17.2.1 (A:186-300) C 10.5 41 0.003 11.9 1.9 52 90-155 53-105 (115)
9 d1l2ha_ b.42.1.2 (A:) Interleu 10.0 42 0.0031 11.7 0.9 13 94-106 113-125 (149)
10 d1md6a_ b.42.1.2 (A:) Interleu 9.2 45 0.0033 11.6 1.0 14 106-119 107-120 (154)
No 1
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=25.74 E-value=17 Score=14.17 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=23.3
Q ss_pred CCCCEEECCCEEE-ECCCCCCCCCCCEEEEE
Q ss_conf 7631444275752-07578823385214898
Q gi|254780542|r 89 RIVRSIFSGWMFA-DSPAMNAIDHSIYDIWL 118 (210)
Q Consensus 89 ~~~~~IF~GWMfA-SSPsLnalEHPvYDIWv 118 (210)
...+.+++++||. ++|.-|..-||+ |+-+
T Consensus 50 ~~~rRl~~~~~~~r~~~~~N~YA~Pi-el~~ 79 (121)
T d2oqea3 50 GTGKRLQQALVYYRSDEDDSQYSHPL-DFCP 79 (121)
T ss_dssp TTSSCEEEEEEEECSSTTSCGGGCBC-SCEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCEE-CEEE
T ss_conf 89862899997663499987465522-4489
No 2
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.63 E-value=26 Score=13.12 Aligned_cols=16 Identities=31% Similarity=0.883 Sum_probs=8.8
Q ss_pred CCEE----EEEEECCCCCCC
Q ss_conf 5214----898613478883
Q gi|254780542|r 112 SIYD----IWLMQCKDPIND 127 (210)
Q Consensus 112 PvYD----IWvl~Ck~p~~~ 127 (210)
|+|| |.+.+|.||--|
T Consensus 14 pvy~~kgeikvfrcsnpacd 33 (36)
T d1pvma3 14 PVYNEKGEIKVFRCSNPACD 33 (36)
T ss_dssp EEECTTSCEEEEEESCTTCC
T ss_pred EEECCCCCEEEEECCCCCCC
T ss_conf 71157772889972797666
No 3
>d1ei5a2 b.61.3.1 (A:418-520) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=13.49 E-value=33 Score=12.45 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=11.0
Q ss_pred EEEEEEECCCCCCCC
Q ss_conf 148986134788832
Q gi|254780542|r 114 YDIWLMQCKDPINDS 128 (210)
Q Consensus 114 YDIWvl~Ck~p~~~~ 128 (210)
=|||++.|.-..+..
T Consensus 52 ~DvW~L~~~R~mDAp 66 (103)
T d1ei5a2 52 SDVWLLPVQRSMDAP 66 (103)
T ss_dssp TTEEEEEECCCSSSS
T ss_pred CCEEEEECCCCCCCC
T ss_conf 946998655547998
No 4
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.21 E-value=33 Score=12.40 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.2
Q ss_pred CCEEEECCCCCCCCCCCEEEEEEECCC
Q ss_conf 757520757882338521489861347
Q gi|254780542|r 97 GWMFADSPAMNAIDHSIYDIWLMQCKD 123 (210)
Q Consensus 97 GWMfASSPsLnalEHPvYDIWvl~Ck~ 123 (210)
|=.|+-|=-+|.|+|||-| .|+.
T Consensus 12 g~~F~DSYL~~~Fd~~vCD----~CRD 34 (36)
T d1d4ua2 12 GKEFMDSYLMDHFDLPTCD----DCRD 34 (36)
T ss_dssp CCEESCSSSTTTTSCCCCT----TTCS
T ss_pred CCHHHHHHHHHCCCCHHCC----CCCC
T ss_conf 7377899999738950114----3547
No 5
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.96 E-value=29 Score=12.76 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=16.8
Q ss_pred CCCCEEECCCEEEECCCCCCCCC
Q ss_conf 76314442757520757882338
Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDH 111 (210)
Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEH 111 (210)
..+..||.||+.-..|-.+..+.
T Consensus 148 ~~dviI~EGWcvG~~p~~~~~~~ 170 (286)
T d1odfa_ 148 PVDIFILEGWFLGFNPILQGIEN 170 (286)
T ss_dssp SCSEEEEEESSTTCCCCCSCTTT
T ss_pred CCCEEEEECHHHCCCCHHHHHHC
T ss_conf 98789970022045412445530
No 6
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=12.61 E-value=35 Score=12.29 Aligned_cols=33 Identities=12% Similarity=-0.039 Sum_probs=25.2
Q ss_pred CCCCEEECCCEEEECCCCCCCCCCCEEEE-EEEC
Q ss_conf 76314442757520757882338521489-8613
Q gi|254780542|r 89 RIVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQC 121 (210)
Q Consensus 89 ~~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~C 121 (210)
.+.+.++++.||...|.-|..-||+=-+- +++.
T Consensus 50 e~~~Rl~~~~~f~r~~~~N~YA~PIeGl~~vVDl 83 (108)
T d1w2za3 50 EKNVRTVRLDCFMKESTVNIYVRPITGITIVADL 83 (108)
T ss_dssp SCCCCEEEEEEEECTTCSCGGGSBCCSEEEEEET
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 8896589999877569987252314850899988
No 7
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.64 E-value=33 Score=12.40 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCH
Q ss_conf 148986134788832000
Q gi|254780542|r 114 YDIWLMQCKDPINDSISN 131 (210)
Q Consensus 114 YDIWvl~Ck~p~~~~~~~ 131 (210)
-|+++.||+.|+++.+-+
T Consensus 205 PDilvcRse~~l~~~~k~ 222 (266)
T d1s1ma2 205 PDILICRSDRAVPANERA 222 (266)
T ss_dssp CSEEEEEESSCCCHHHHH
T ss_pred CCEEEECCCCCCCHHHHH
T ss_conf 875763365579988999
No 8
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=10.50 E-value=41 Score=11.86 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=33.2
Q ss_pred CCCEEECCCEEEECCCCCCCCCCCEEEE-EEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6314442757520757882338521489-86134788832000003440000000368842357101
Q gi|254780542|r 90 IVRSIFSGWMFADSPAMNAIDHSIYDIW-LMQCKDPINDSISNSESISKKALSEYSSTDITSQGSEK 155 (210)
Q Consensus 90 ~~~~IF~GWMfASSPsLnalEHPvYDIW-vl~Ck~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (210)
....+.+++||..+|.-|..-||+=-+- ++++.. +..-+..+.++..+|.+.
T Consensus 53 ~~~Rl~~~~~f~~~~~~N~YA~PIeGl~~vvDl~~--------------~~Vi~i~D~~~vpvP~~~ 105 (115)
T d1d6za3 53 QDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQ--------------KKIVKIEEGPVVPVPMTA 105 (115)
T ss_dssp SSSCEEEEEEEECCSSSCGGGSEEEEEEEEEETTT--------------TEEEEEEECCCCCCCCSC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCC--------------CEEEEEECCCCCCCCCCC
T ss_conf 78538999997858999856252586189998998--------------989999778876389998
No 9
>d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.00 E-value=42 Score=11.75 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=8.1
Q ss_pred EECCCEEEECCCC
Q ss_conf 4427575207578
Q gi|254780542|r 94 IFSGWMFADSPAM 106 (210)
Q Consensus 94 IF~GWMfASSPsL 106 (210)
-|-||.++.|+.=
T Consensus 113 a~PgWFIsTs~~~ 125 (149)
T d1l2ha_ 113 QFPNFYISTSQAE 125 (149)
T ss_dssp SSTTCBEEBCSST
T ss_pred CCCCCEEECCCCC
T ss_conf 6899689748768
No 10
>d1md6a_ b.42.1.2 (A:) Interleukin-1F5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.19 E-value=45 Score=11.56 Aligned_cols=14 Identities=14% Similarity=0.638 Sum_probs=5.8
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 88233852148986
Q gi|254780542|r 106 MNAIDHSIYDIWLM 119 (210)
Q Consensus 106 LnalEHPvYDIWvl 119 (210)
.+.||..-|==|-+
T Consensus 107 t~tfESaa~PgWFI 120 (154)
T d1md6a_ 107 TSSFESAAYPGWFL 120 (154)
T ss_dssp CEEEEESSSTTCEE
T ss_pred EEEEEECCCCCCEE
T ss_conf 36898545799579
Done!