RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780542|ref|YP_003064955.1| hypothetical protein
CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>gnl|CDD|34378 COG4765, COG4765, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 164

 Score =  142 bits (359), Expect = 6e-35
 Identities = 59/103 (57%), Positives = 77/103 (74%)

Query: 20  ANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAF 79
           A +ARF N VA+F+ +DKITGR+  FDV I ++ QFG+L + P VCYSR D EA + DAF
Sbjct: 51  AEAARFKNYVAKFSALDKITGRITEFDVYIGETVQFGALQVTPRVCYSRLDDEAPKTDAF 110

Query: 80  VSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQCK 122
           V++ EI  DR +R IF+GWMFA SP +NA++H IYD+WL  CK
Sbjct: 111 VTVDEITLDRKIRRIFTGWMFASSPGLNAVEHPIYDVWLKDCK 153


>gnl|CDD|38891 KOG3687, KOG3687, KOG3687, Tuberin - Rap/ran-GTPase-activating
           protein [Cell cycle control, cell division, chromosome
           partitioning, Signal transduction mechanisms].
          Length = 1697

 Score = 34.7 bits (79), Expect = 0.018
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 108 AIDHSIYDIWLMQCKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEK 167
            + H +  +W ++C+ P      N  +   ++    S  DI  + S ++  +S       
Sbjct: 839 CLAHHVIAMWFIRCRLPFRKDFVNFITKGLRSNVLLSFDDIPEKDSFRARSTSLT----- 893

Query: 168 ESSQPLENNLSMDLKGRPIQELG 190
           E  +      S D    P  +  
Sbjct: 894 ERGKSRIQTGSADENSVPQADDS 916


>gnl|CDD|30099 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
           II mediates cortical contraction in cell motility, and
           is the motor in smooth and skeletal muscle. This
           catalytic (head) domain has ATPase activity and belongs
           to the larger group of P-loop NTPases. Myosins are
           actin-dependent molecular motors that play important
           roles in muscle contraction, cell motility, and
           organelle transport. The head domain is a molecular
           motor, which utilizes ATP hydrolysis to generate
           directed movement toward the plus end along actin
           filaments. A cyclical interaction between myosin and
           actin provides the driving force. Rates of ATP
           hydrolysis and consequently the speed of movement along
           actin filaments vary widely, from about 0.04 micrometer
           per second for myosin I to 4.5 micrometer per second for
           myosin II in skeletal muscle. Myosin II moves in
           discrete steps about 5-10 nm long and generates 1-5
           piconewtons of force. Upon ATP binding, the myosin head
           dissociates from an actin filament. ATP hydrolysis
           causes the head to pivot and associate with a new actin
           subunit. The release of Pi causes the head to pivot and
           move the filament (power stroke). Release of ADP
           completes the cycle..
          Length = 693

 Score = 32.5 bits (74), Expect = 0.097
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 114 YDI--WLMQCKDPINDSI------SNSESISKKALSEYSSTDITSQGSEKSSGSSSNKT- 164
           Y+I  WL + KDP+ND++      S+ + +++       ++     G  K     S +T 
Sbjct: 505 YNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKGGSFRTV 564

Query: 165 --LEKESSQPLENNLSM 179
             L KE    L   L  
Sbjct: 565 SQLYKEQLNKLMTTLRS 581


>gnl|CDD|35035 COG5476, COG5476, Uncharacterized conserved protein [Function
           unknown].
          Length = 488

 Score = 29.5 bits (66), Expect = 0.72
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 8   LILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYS 67
              +  + H  FA +   A ++   A    +   V  F               +PM    
Sbjct: 155 FAAYRTYPHTDFAETGERAWELLLDALRGGVRPVVSLFRRMP----FLLPTSREPMRSLY 210

Query: 68  RDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAI 109
              +  +  D  +S+S          +  G+  AD P M  I
Sbjct: 211 DRLKAQEARDGILSVS----------VAHGFPAADVPEMGTI 242


>gnl|CDD|176776 cd08798, Death_NFkB2_p100, Death domain of the Nuclear
           Factor-KappaB2 precursor protein p100.  Death Domain
           (DD) of the Nuclear Factor-KappaB2 (NF-kB2) precursor
           protein p100. The NF-kB family of transcription factors
           play a central role in cardiovascular growth, stress
           response, and inflammation by controlling the expression
           of a network of different genes. There are five NF-kB
           proteins, all containing an N-terminal REL Homology
           Domain (RHD). NF-kB2 (or p52) is produced from the
           processing of the precursor protein p100, which contains
           ANK repeats and a C-terminal DD in addition to the RHD.
           It is regulated by the non-canonical NF-kB pathway. The
           p100 precursor is cytosolic and interacts with RelB.
           Upon phosphorylation by IKKalpha, p100 is processed to
           its 52kDa active, DNA binding form and the p52/RelB
           complex is translocated into the nucleus. The
           non-canonical pathway plays a role in adaptive immunity
           and lymphorganogenesis. In general, DDs are
           protein-protein interaction domains found in a variety
           of domain architectures. Their common feature is that
           they form homodimers by self-association or heterodimers
           by associating with other members of the DD superfamily
           including CARD (Caspase activation and recruitment
           domain), DED (Death Effector Domain), and PYRIN. They
           serve as adaptors in signaling pathways and can recruit
           other proteins into signaling complexes.
          Length = 76

 Score = 27.9 bits (62), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 165 LEKESSQPLENNL-SMDLKGRPIQELGNNLSDSGLNE 200
             K +  P  + L S +L G P+Q L   L D GL E
Sbjct: 33  TYKPTQSPPGSLLRSYELAGGPLQGLIEALQDMGLRE 69


>gnl|CDD|114185 pfam05445, Pox_ser-thr_kin, Poxvirus serine/threonine protein
           kinase. 
          Length = 434

 Score = 26.2 bits (58), Expect = 6.7
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 48  EINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDRIV-RSIFSGWM 99
           EI +  +F   + +  +C ++D  +  R+   +     F +  + R +FS W+
Sbjct: 381 EIEKDPEFNKALEEFFMCCTKDTCDKFRLKVSILHPISFLENFIMRDLFSNWI 433


>gnl|CDD|147016 pfam04654, DUF599, Protein of unknown function, DUF599.  This
           family includes several uncharacterized proteins.
          Length = 216

 Score = 26.0 bits (58), Expect = 7.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 1   MKYRVLLLILFFVFSHAKFANSARFANKVA 30
            + ++LLL++ F+++  KF  S R  N  +
Sbjct: 105 FELKLLLLLVIFLYAFFKFTWSIRQFNYCS 134


>gnl|CDD|36175 KOG0957, KOG0957, KOG0957, PHD finger protein [General function
           prediction only].
          Length = 707

 Score = 25.9 bits (56), Expect = 9.0
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 121 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLEN 175
                 D  S   S S        + +    GSE+ SGS S +  ++E S+  EN
Sbjct: 35  FATGSEDHSSGDGSDSD--FEVNPAEEDAKTGSEEDSGSDSQQLSDEEESEDEEN 87


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,259,700
Number of extensions: 106565
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 14
Length of query: 210
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 120
Effective length of database: 4,318,927
Effective search space: 518271240
Effective search space used: 518271240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)