RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780542|ref|YP_003064955.1| hypothetical protein
CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>gnl|CDD|150579 pfam09923, DUF2155, Uncharacterized protein conserved in bacteria
           (DUF2155).  This domain, found in various hypothetical
           prokaryotic proteins, has no known function.
          Length = 91

 Score =  123 bits (311), Expect = 3e-29
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 30  AEFAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDR 89
           A   G+DKITGR    ++++ ++A+FG+L +    C  R   E    DAF  +  I    
Sbjct: 1   AVLRGLDKITGRTTDLELKVGETARFGALQVTLRECEKRYPEENPDGDAFAEL-TIRERG 59

Query: 90  IVRSIFSGWMFADSPAMNAIDHSIYDIWLMQC 121
               IFSGWMFA SPA+NA++H  YD+W+++C
Sbjct: 60  DGEPIFSGWMFASSPALNALEHPRYDVWVLRC 91


>gnl|CDD|132141 TIGR03097, PEP_O_lig_1, probable O-glycosylation ligase, exosortase
           system type 1-associated.  These proteins are members of
           the O-antigen polymerase (wzy) family described by Pfam
           model pfam04932. This group is associated with genomes
           and ususally genomic contexts containing elements of the
           exosortase/PEP-CTERM protein export system,
           specificially the type 1 variety of this system
           described by the Genome Property, GenProp0652.
          Length = 402

 Score = 27.4 bits (61), Expect = 2.6
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 66  YSRDDREAQRIDAFVSISEIFTDRIVR-SIFSGW------MFADSPAMNAIDHSIY 114
           Y  D     RI+A++    +  DR +    F          +A  P      HSIY
Sbjct: 266 YEEDASAMGRINAWLLAWNLAKDRPLVGGGFEYQDEFRFSTYAPVPTNVHAAHSIY 321


>gnl|CDD|183443 PRK12328, nusA, transcription elongation factor NusA;
          Provisional.
          Length = 374

 Score = 27.3 bits (61), Expect = 3.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 37 KITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISE 84
          K  G    +DVEI+   +   L  K  V    D+R     + F+S+SE
Sbjct: 36 KELGPEYEYDVEIDPENKTLKLYQKIEVVADDDERLQNDPEKFISLSE 83


>gnl|CDD|182265 PRK10144, PRK10144, formate-dependent nitrite reductase complex
          subunit NrfF; Provisional.
          Length = 126

 Score = 26.8 bits (59), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 1  MKYRVLLLILFFVFSHAKFANSARFAN 27
           K  + LL+LF  F+ A+  ++ +FAN
Sbjct: 1  NKGLLTLLLLFTCFARAQVVDTWQFAN 27


>gnl|CDD|130809 TIGR01748, rhaA, L-rhamnose isomerase.  This enzyme interconverts
           L-rhamnose and L-rhamnulose. In some species, including
           E. coli, this is the first step in rhamnose catabolism.
           Sequential steps are catalyzed by rhamnulose kinase
           (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to
           yield glycerone phosphate and (S)-lactaldehyde.
           Characterization of this family is based on members in
           E. coli and Salmonella.
          Length = 414

 Score = 26.4 bits (58), Expect = 5.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 93  SIFSGWMFADSPAMNAIDHSIYDIWLMQCK 122
           + FS  + AD   ++  D SI   W+  CK
Sbjct: 130 TCFSHPLSADGFTLSHPDDSIRQFWIDHCK 159


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,144,291
Number of extensions: 182351
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 13
Length of query: 210
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,071,361
Effective search space: 492634681
Effective search space used: 492634681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)