RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780542|ref|YP_003064955.1| hypothetical protein
CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>3bz1_A Photosystem Q(B) protein; electron transport photosystem,
           membrane complex, transmembrane alpha-helix; HET: CLA
           PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A
           {Thermosynechococcus elongatus} PDB: 1s5l_A* 2axt_A*
           3bz2_A* 1w5c_A* 1izl_A* 3a0b_A* 3a0h_A* (A:29-142)
          Length = 114

 Score = 30.4 bits (69), Expect = 0.18
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 76  IDAFVSISEIFTDRIVRSIFSGWMF-------ADSPAMNAIDHSIYDIW 117
           + AF++   +  D I   +    ++       A  P+ NAI    Y IW
Sbjct: 21  VIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIW 69


>3bz1_D Photosystem II reaction center D2 protein; electron
           transport photosystem, membrane complex, transmembrane
           alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG
           LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1izl_D*
           1s5l_D* 1w5c_D* 2axt_D* 3bz2_D* 3a0b_D* 3a0h_D*
           (D:31-141)
          Length = 111

 Score = 29.3 bits (66), Expect = 0.39
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 76  IDAFVSISEIFTDRIVRSIFSGWMF---ADSPAMNAIDHSIYDIW 117
           +     ++  +T  +  S   G  F   A S   N++ HS+  +W
Sbjct: 19  LTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLW 63


>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump,
           ATPase, K+ binding, haloacid dehydrogenease superfamily,
           phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus
           acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
           (A:1-86,A:171-268)
          Length = 184

 Score = 28.0 bits (62), Expect = 0.96
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 143 YSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMDLKGRPIQELGNNLS---DSGLN 199
           Y     +   ++       +K  +K     L+  +SMD     + EL N        GL 
Sbjct: 10  YEPAATSENATKSKKKGKKDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLT 69

Query: 200 EQD 202
              
Sbjct: 70  NAR 72


>1tzz_A Hypothetical protein L1841; structural genomics, mandelate
           racemase like fold, nysgxrc target T1523, PSI, protein
           structure initiative; 1.86A {Bradyrhizobium japonicum}
           (A:1-133,A:376-392)
          Length = 150

 Score = 27.7 bits (61), Expect = 1.2
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 68  RDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIW 117
            D ++           +     ++ +   G     S A+  ID +++D  
Sbjct: 78  ADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAV 127


>3bsm_A Mandelate racemase/muconate lactonizing enzyme; structural
           genomics, NYSGXRC, target 9262H, clone 9262H1BCT8P1;
           2.20A {Chromohalobacter salexigens dsm 3043}
           (A:1-110,A:378-413)
          Length = 146

 Score = 26.0 bits (57), Expect = 3.8
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 84  EIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIW 117
           E     + R  +         A+ A+D +++DI 
Sbjct: 66  EDTWQYLYRGAYWRRGPVTMTAIAAVDMALWDIK 99


>2qgy_A Enolase from the environmental genome shotgun sequencing of
           the sargasso SEA; structural genomics, unknown function,
           PSI-2; 1.80A {Environmental sample} (A:1-127,A:361-391)
          Length = 158

 Score = 25.0 bits (54), Expect = 7.3
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 64  VCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIW 117
           +     +   +  +      + F ++I            S A +AI+ +++DI 
Sbjct: 63  IAIIIKELFREISNIPNLSIKSFYNKISLLSDGHRGLDFSSATSAIEIALWDIS 116


>2j0o_A Invasin IPAD; type III secretion, cell invasion, T3SS,
           plasmid, virulence; 3.00A {Shigella flexneri}
           (A:1-193,A:236-318)
          Length = 276

 Score = 24.5 bits (53), Expect = 9.5
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 124 PINDSISNSESIS---KKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD 180
           P N + S++E+++   K   S +  + +T       +  ++N+ L+KE SQ      S++
Sbjct: 3   PNNTNGSSTETVNSDIKTTTSSHPVSSLTMLNDTLHNIRTTNQALKKELSQKTLTKTSLE 62

Query: 181 LKGRPIQELGNNLSDSG 197
                  ++  +++ S 
Sbjct: 63  EIALHSSQISMDVNKSA 79


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,371,313
Number of extensions: 52545
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 9
Length of query: 210
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 125
Effective length of database: 2,082,624
Effective search space: 260328000
Effective search space used: 260328000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)