BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] (210 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 430 bits (1106), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII 60 MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII Sbjct: 1 MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII 60 Query: 61 KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ 120 KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ Sbjct: 61 KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ 120 Query: 121 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD 180 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD Sbjct: 121 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD 180 Query: 181 LKGRPIQELGNNLSDSGLNEQDHNDVQISK 210 LKGRPIQELGNNLSDSGLNEQDHNDVQISK Sbjct: 181 LKGRPIQELGNNLSDSGLNEQDHNDVQISK 210 >gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] Length = 277 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 32 FAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDR 89 F+GM I G +L ++++ S F +++ M+ S+ D AF+SIS + + Sbjct: 102 FSGMFAI-GIILI--LKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 22.7 bits (47), Expect = 4.8, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 14/116 (12%) Query: 70 DREAQRIDAFVSISEIF---TDRIVRSIFSGWMFADSPA-MNAIDHSIYDIWLMQCKDPI 125 +RE + ++S++F + I+R F+ ++ ++P+ MN I + L Q + I Sbjct: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 Query: 126 NDSISNSES-------ISKKALSE-YSST--DITSQGSEKSSGSSSNKTLEKESSQ 171 + E I K S YS T DI+ EK+ S + K EKESS Sbjct: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.129 0.359 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,310 Number of Sequences: 1233 Number of extensions: 4466 Number of successful extensions: 13 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 10 length of query: 210 length of database: 328,796 effective HSP length: 70 effective length of query: 140 effective length of database: 242,486 effective search space: 33948040 effective search space used: 33948040 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)