BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780542|ref|YP_003064955.1| hypothetical protein
CLIBASIA_02145 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780542|ref|YP_003064955.1| hypothetical protein CLIBASIA_02145 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 210

 Score =  430 bits (1106), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII 60
           MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII
Sbjct: 1   MKYRVLLLILFFVFSHAKFANSARFANKVAEFAGMDKITGRVLTFDVEINQSAQFGSLII 60

Query: 61  KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ 120
           KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ
Sbjct: 61  KPMVCYSRDDREAQRIDAFVSISEIFTDRIVRSIFSGWMFADSPAMNAIDHSIYDIWLMQ 120

Query: 121 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD 180
           CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD
Sbjct: 121 CKDPINDSISNSESISKKALSEYSSTDITSQGSEKSSGSSSNKTLEKESSQPLENNLSMD 180

Query: 181 LKGRPIQELGNNLSDSGLNEQDHNDVQISK 210
           LKGRPIQELGNNLSDSGLNEQDHNDVQISK
Sbjct: 181 LKGRPIQELGNNLSDSGLNEQDHNDVQISK 210


>gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport)
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 277

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 32  FAGMDKITGRVLTFDVEINQSAQFGSLIIKPMVCYSRDDREAQRIDAFVSISEIFTDR 89
           F+GM  I G +L   ++++ S  F  +++  M+  S+ D       AF+SIS +   +
Sbjct: 102 FSGMFAI-GIILI--LKVHSSLHFSHILLGDMLGISKSDIITTAFFAFISISFLILKK 156


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 22.7 bits (47), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 70  DREAQRIDAFVSISEIF---TDRIVRSIFSGWMFADSPA-MNAIDHSIYDIWLMQCKDPI 125
           +RE   +    ++S++F    + I+R  F+ ++  ++P+ MN     I  + L Q  + I
Sbjct: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528

Query: 126 NDSISNSES-------ISKKALSE-YSST--DITSQGSEKSSGSSSNKTLEKESSQ 171
               +  E        I K   S  YS T  DI+    EK+  S + K  EKESS 
Sbjct: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,310
Number of Sequences: 1233
Number of extensions: 4466
Number of successful extensions: 13
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 210
length of database: 328,796
effective HSP length: 70
effective length of query: 140
effective length of database: 242,486
effective search space: 33948040
effective search space used: 33948040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)