HHsearch alignment for GI: 254780543 and conserved domain: COG3761

>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=100.00  E-value=0  Score=277.78  Aligned_cols=116  Identities=53%  Similarity=1.064  Sum_probs=107.9

Q ss_pred             HHCCCCCEEHHHHHHHHHCEEEEEECCCCEEEEEC-CCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             33147966102143313070436666587865505-77777762089947866755368653200321416889856456
Q gi|254780543|r    9 FTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESR-KNINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRIGVPKAEEEN   87 (131)
Q Consensus         9 ftWwn~~TlgT~l~t~~~g~~VG~D~~GNkYye~~-~~~~~~~rRwV~Y~~~~d~s~IppeWh~WLh~~~d~~P~~~~~~   87 (131)
T Consensus         1 ftWwn-qt~gTrfh-----~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngyaEas~IPp~WhgWlHh~vd~~P~~~~~~   74 (118)
T COG3761           1 FTWWN-QTFGTRFH-----KKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGYAEASKIPPGWHGWLHHRVDEPPKSEQLF   74 (118)
T ss_pred             CCHHH-HHHHHHHH-----HHCCCHHCCCEEEECCCCCCCCCEEEEEEECCCCHHCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             93677-67888998-----8605110053444315776678704689975852011489731445555316896444446


Q ss_pred             CCCHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             76110167687788710327873334666-44444787779999
Q gi|254780543|r   88 SFDWQKPHCVNATGSLNSYYPRFRRDNMA-GTSTKGKYSAWSPD  130 (131)
Q Consensus        88 ~~~Wqk~h~~N~TGT~~AY~P~~~~~~~~-~~~~~~~Y~aW~Pe  130 (131)
T Consensus        75 ~reWqKph~pn~tgt~~a~rPkgs~~~~gerp~~t~dYdaWtP~  118 (118)
T COG3761          75 PREWQKPHLPNLTGTPHAYRPKGSLARAGERPRVTGDYDAWTPG  118 (118)
T ss_pred             HHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             43412555668789821235676413567676423553456799