HHsearch alignment for GI: 254780543 and conserved domain: COG3761
>COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=277.78 Aligned_cols=116 Identities=53% Similarity=1.064 Sum_probs=107.9
Q ss_pred HHCCCCCEEHHHHHHHHHCEEEEEECCCCEEEEEC-CCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 33147966102143313070436666587865505-77777762089947866755368653200321416889856456
Q gi|254780543|r 9 FTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESR-KNINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRIGVPKAEEEN 87 (131)
Q Consensus 9 ftWwn~~TlgT~l~t~~~g~~VG~D~~GNkYye~~-~~~~~~~rRwV~Y~~~~d~s~IppeWh~WLh~~~d~~P~~~~~~ 87 (131)
T Consensus 1 ftWwn-qt~gTrfh-----~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngyaEas~IPp~WhgWlHh~vd~~P~~~~~~ 74 (118)
T COG3761 1 FTWWN-QTFGTRFH-----KKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGYAEASKIPPGWHGWLHHRVDEPPKSEQLF 74 (118)
T ss_pred CCHHH-HHHHHHHH-----HHCCCHHCCCEEEECCCCCCCCCEEEEEEECCCCHHCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 93677-67888998-----8605110053444315776678704689975852011489731445555316896444446
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 76110167687788710327873334666-44444787779999
Q gi|254780543|r 88 SFDWQKPHCVNATGSLNSYYPRFRRDNMA-GTSTKGKYSAWSPD 130 (131)
Q Consensus 88 ~~~Wqk~h~~N~TGT~~AY~P~~~~~~~~-~~~~~~~Y~aW~Pe 130 (131)
T Consensus 75 ~reWqKph~pn~tgt~~a~rPkgs~~~~gerp~~t~dYdaWtP~ 118 (118)
T COG3761 75 PREWQKPHLPNLTGTPHAYRPKGSLARAGERPRVTGDYDAWTPG 118 (118)
T ss_pred HHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43412555668789821235676413567676423553456799