HHsearch alignment for GI: 254780543 and conserved domain: pfam05071

>pfam05071 NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12. This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function.

Probab=100.00  E-value=2.8e-45  Score=262.61  Aligned_cols=100  Identities=45%  Similarity=0.951  Sum_probs=91.1

Q ss_pred             CEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf             70436666587865505777777620899478667553686532003214168898564567611016768778871032
Q gi|254780543|r   27 GHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRIGVPKAEEENSFDWQKPHCVNATGSLNSY  106 (131)
Q Consensus        27 g~~VG~D~~GNkYye~~~~~~~~~rRwV~Y~~~~d~s~IppeWh~WLh~~~d~~P~~~~~~~~~Wqk~h~~N~TGT~~AY  106 (131)
T Consensus         1 G~~VG~D~~GNkYYe~~~~~-~~~~RWV~Y~~~~daS~IppeWh~WLh~~~d~~P~~~~~~~~~Wqk~h~~N~TGT~~aY   79 (100)
T pfam05071         1 GTLVGEDEFGNKYYENKDEL-GGRRRWVIYNGKAEASRVPPEWHGWLHHTTDEPPTEEPLKPRAWEKPHQPNLTGTPGAY   79 (100)
T ss_pred             CCEEEECCCCCCCCCCCCCC-CCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98820618887846778877-88545888599877352880111022226678986466667654467788788996678


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78733346664444478777999
Q gi|254780543|r  107 YPRFRRDNMAGTSTKGKYSAWSP  129 (131)
Q Consensus       107 ~P~~~~~~~~~~~~~~~Y~aW~P  129 (131)
T Consensus        80 ~P~~~~~~--~~~~~~~Ye~W~P  100 (100)
T pfam05071        80 RPYGSLLR--RPRATGDYEAWTP  100 (100)
T ss_pred             CCCCCCCC--CCCCCCCCCCCCC
T ss_conf             18985002--3113478677796