RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
         (131 letters)



>gnl|CDD|181273 PRK08183, PRK08183, NADH dehydrogenase; Validated.
          Length = 133

 Score =  152 bits (385), Expect = 3e-38
 Identities = 72/132 (54%), Positives = 86/132 (65%), Gaps = 5/132 (3%)

Query: 2   KNFLLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESR--KNINGSSRRWVIYNGY 59
           K+FLLQIFTWWNGQTLGTRFFTWR G  VG+DEFGN YY ++  K  +G  RRWVIYNGY
Sbjct: 1   KSFLLQIFTWWNGQTLGTRFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGY 60

Query: 60  TDPSSIPPMWHGWIHHRRIGVPKAEEENSFDWQKPHCVNATGSLNSYYPR--FRRDNMAG 117
            + S IPP WHGW+HH     P  E     +W+KPH  N TG+  +Y P+    R     
Sbjct: 61  AEASRIPPEWHGWLHHTVDVPPTKEPYPPREWEKPHQPNLTGTPLAYRPKGSILRGGERP 120

Query: 118 TSTKGKYSAWSP 129
            +T G Y AW+P
Sbjct: 121 RAT-GDYDAWTP 131


>gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional.
          Length = 99

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 20 RFFTWRFGHIVGKDEFGNTYYESRK-NINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRI 78
          +FF   F   VG+DEF N YYESR  +  G  RR+VIY    +P+ IPP WH W+HH   
Sbjct: 6  KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNVNEPTKIPPSWHAWLHHLVN 65

Query: 79 GVPKAEEENSFDWQK 93
           +PK  +   F WQK
Sbjct: 66 EIPKNIQ--LFPWQK 78


>gnl|CDD|178643 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit;
           Provisional.
          Length = 115

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 25  RFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNG--YTDPSSIPPMWHGWIHHRRIGVPK 82
           R G +VG+DEFGN YYE+    +G   RWV Y      + S+IPP WHGW+H+      +
Sbjct: 8   RAGRLVGEDEFGNKYYENPSYQSGR-HRWVEYADKDDYNASNIPPEWHGWLHYVNDEPGE 66

Query: 83  AEEENSFDWQKPHCVN--ATGSLNSYYPRFRRDNMAGTSTKGKYSAWSP 129
            E+  +  +Q         TG+   Y+P+    +    + K +Y+ WSP
Sbjct: 67  LEDRTAPRYQLEFIAGGTTTGTQYMYHPKGHFLSKRPRNWK-RYTPWSP 114


>gnl|CDD|178333 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1
          alpha subcomplex subunit.
          Length = 159

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 29 IVGKDEFGNTYYESRKNINGSSRRWVIY--NGYTDPSSIPPMWHGWIHH 75
          +VG D+FGN YY+   +      RWV Y      + S +P  WHGW+H 
Sbjct: 51 LVGVDKFGNKYYQKLGDTQYGRHRWVEYAEKSRYNASQVPAEWHGWLHF 99


>gnl|CDD|181299 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase;
           Validated.
          Length = 252

 Score = 25.2 bits (56), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 90  DWQKPHCVNATGSLN---SYYPRFRR 112
           DWQ+   VNA G+ N   +  P+FRR
Sbjct: 99  DWQQTFAVNAGGAFNLFRAVMPQFRR 124


>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
          Length = 312

 Score = 25.0 bits (55), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 8   IFTWWNGQTLGTRFFTWRFGHIV 30
           + +  + Q+LG  F TW F HI+
Sbjct: 257 LLSSADAQSLGLDFDTWLFIHII 279


>gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate
           4-alpha-galacturonosyltransferase.
          Length = 657

 Score = 24.5 bits (53), Expect = 8.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 110 FRRDNMAGTSTKGKYSAWSPDY 131
             R     TS KGKYS W  DY
Sbjct: 169 IERSKSLDTSVKGKYSIWRRDY 190


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.137    0.481 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,294,586
Number of extensions: 130048
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 11
Length of query: 131
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,201,009
Effective search space: 201648432
Effective search space used: 201648432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)