RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >gnl|CDD|181273 PRK08183, PRK08183, NADH dehydrogenase; Validated. Length = 133 Score = 152 bits (385), Expect = 3e-38 Identities = 72/132 (54%), Positives = 86/132 (65%), Gaps = 5/132 (3%) Query: 2 KNFLLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTYYESR--KNINGSSRRWVIYNGY 59 K+FLLQIFTWWNGQTLGTRFFTWR G VG+DEFGN YY ++ K +G RRWVIYNGY Sbjct: 1 KSFLLQIFTWWNGQTLGTRFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGY 60 Query: 60 TDPSSIPPMWHGWIHHRRIGVPKAEEENSFDWQKPHCVNATGSLNSYYPR--FRRDNMAG 117 + S IPP WHGW+HH P E +W+KPH N TG+ +Y P+ R Sbjct: 61 AEASRIPPEWHGWLHHTVDVPPTKEPYPPREWEKPHQPNLTGTPLAYRPKGSILRGGERP 120 Query: 118 TSTKGKYSAWSP 129 +T G Y AW+P Sbjct: 121 RAT-GDYDAWTP 131 >gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional. Length = 99 Score = 62.7 bits (152), Expect = 3e-11 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 20 RFFTWRFGHIVGKDEFGNTYYESRK-NINGSSRRWVIYNGYTDPSSIPPMWHGWIHHRRI 78 +FF F VG+DEF N YYESR + G RR+VIY +P+ IPP WH W+HH Sbjct: 6 KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNVNEPTKIPPSWHAWLHHLVN 65 Query: 79 GVPKAEEENSFDWQK 93 +PK + F WQK Sbjct: 66 EIPKNIQ--LFPWQK 78 >gnl|CDD|178643 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional. Length = 115 Score = 52.9 bits (127), Expect = 2e-08 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 25 RFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNG--YTDPSSIPPMWHGWIHHRRIGVPK 82 R G +VG+DEFGN YYE+ +G RWV Y + S+IPP WHGW+H+ + Sbjct: 8 RAGRLVGEDEFGNKYYENPSYQSGR-HRWVEYADKDDYNASNIPPEWHGWLHYVNDEPGE 66 Query: 83 AEEENSFDWQKPHCVN--ATGSLNSYYPRFRRDNMAGTSTKGKYSAWSP 129 E+ + +Q TG+ Y+P+ + + K +Y+ WSP Sbjct: 67 LEDRTAPRYQLEFIAGGTTTGTQYMYHPKGHFLSKRPRNWK-RYTPWSP 114 >gnl|CDD|178333 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit. Length = 159 Score = 49.2 bits (117), Expect = 4e-07 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 29 IVGKDEFGNTYYESRKNINGSSRRWVIY--NGYTDPSSIPPMWHGWIHH 75 +VG D+FGN YY+ + RWV Y + S +P WHGW+H Sbjct: 51 LVGVDKFGNKYYQKLGDTQYGRHRWVEYAEKSRYNASQVPAEWHGWLHF 99 >gnl|CDD|181299 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated. Length = 252 Score = 25.2 bits (56), Expect = 5.4 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Query: 90 DWQKPHCVNATGSLN---SYYPRFRR 112 DWQ+ VNA G+ N + P+FRR Sbjct: 99 DWQQTFAVNAGGAFNLFRAVMPQFRR 124 >gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional. Length = 312 Score = 25.0 bits (55), Expect = 6.0 Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 8 IFTWWNGQTLGTRFFTWRFGHIV 30 + + + Q+LG F TW F HI+ Sbjct: 257 LLSSADAQSLGLDFDTWLFIHII 279 >gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase. Length = 657 Score = 24.5 bits (53), Expect = 8.8 Identities = 11/22 (50%), Positives = 11/22 (50%) Query: 110 FRRDNMAGTSTKGKYSAWSPDY 131 R TS KGKYS W DY Sbjct: 169 IERSKSLDTSVKGKYSIWRRDY 190 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.137 0.481 Gapped Lambda K H 0.267 0.0609 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,294,586 Number of extensions: 130048 Number of successful extensions: 216 Number of sequences better than 10.0: 1 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 11 Length of query: 131 Length of database: 5,994,473 Length adjustment: 83 Effective length of query: 48 Effective length of database: 4,201,009 Effective search space: 201648432 Effective search space used: 201648432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.1 bits)