RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 Score = 27.0 bits (59), Expect = 1.5 Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 4/65 (6%) Query: 7 QIFTWWNGQTLGTRFFTWRFGHIVGKDEFGN---TYYESRKNINGSSRRWVIYNGYTDPS 63 + F WN L + + +D G G+ +W + Sbjct: 217 KAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTG-KWTAISALEYGV 275 Query: 64 SIPPM 68 + + Sbjct: 276 PVTLI 280 >3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 250 Score = 26.2 bits (57), Expect = 2.4 Identities = 5/30 (16%), Positives = 13/30 (43%) Query: 29 IVGKDEFGNTYYESRKNINGSSRRWVIYNG 58 G D + T+Y + + ++W + + Sbjct: 90 ATGPDIWNTTWYPKSADHVPTDKKWYVVDA 119 >1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A Length = 787 Score = 25.9 bits (57), Expect = 2.8 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 2 KNFLLQIFTWWNGQTLGTRFFT-----WRFGHIVGKDEFGNTYYESRKNINGSSRRWVIY 56 K L +F +WNG+T + R GN YY +++ + + Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRV 175 >2gz1_A Aspartate beta-semialdehyde dehydrogenase; aspartate pathway, oxidoreductase; HET: NAP; 1.80A {Streptococcus pneumoniae} SCOP: c.2.1.3 d.81.1.1 PDB: 2gyy_A* 2gz2_A* 2gz3_A* Length = 366 Score = 25.7 bits (55), Expect = 3.6 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 3/101 (2%) Query: 18 GTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSIPPMWHGW-IHHR 76 + + K ++ S + + Y + + P+ Sbjct: 216 DYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAA 275 Query: 77 RIGVPKAEEENSFDWQKPHCVNATGSLNSYYPRFRRDNMAG 117 G ++ + P +NA GS +++ R R+D A Sbjct: 276 FPGAVLEDDVAHQIY--PQAINAVGSRDTFVGRIRKDLDAE 314 >1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3 Length = 451 Score = 24.8 bits (54), Expect = 6.6 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 92 QKPHCVNATGSLNSYYPRFRR 112 + V GSL ++P+F Sbjct: 391 RSEVTVGVDGSLYKFHPKFCE 411 >1cza_N Hexokinase type I; structurally homologous domains; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* Length = 917 Score = 24.8 bits (54), Expect = 6.8 Identities = 7/35 (20%), Positives = 13/35 (37%) Query: 78 IGVPKAEEENSFDWQKPHCVNATGSLNSYYPRFRR 112 + +N + V GSL +P++ R Sbjct: 391 GAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSR 425 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Score = 24.2 bits (52), Expect = 8.3 Identities = 8/96 (8%), Positives = 20/96 (20%), Gaps = 3/96 (3%) Query: 21 FFTWRFGHIVGKDEFGNTYYESRKNINGSSRR-WVIYNGYTDPSSIPPMWHGWIHHRRIG 79 + + F H + G T+ + + P + + Sbjct: 248 YPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFD--PRPHQYEFGRRGLEY 305 Query: 80 VPKAEEENSFDWQKPHCVNATGSLNSYYPRFRRDNM 115 ++ + Q RR + Sbjct: 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV 341 >3nap_B Capsid protein; insect cripavirus, icosahedral virus; 2.50A {Triatoma virus} Length = 255 Score = 24.2 bits (51), Expect = 8.9 Identities = 3/36 (8%), Positives = 7/36 (19%) Query: 4 FLLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTY 39 + F W F+ + + Sbjct: 88 QFIGSFLWNTSDIENKEIFSLKLPDALMSPMIREKL 123 >1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217 Score = 24.1 bits (52), Expect = 9.0 Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%) Query: 20 RFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSIP 66 F V D G R+ + RW ++ G + Sbjct: 70 PVFGLH-DKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDL 115 >1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883 Score = 24.3 bits (52), Expect = 9.8 Identities = 10/35 (28%), Positives = 12/35 (34%) Query: 5 LLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTY 39 L + G L F RF +G D GN Sbjct: 224 LNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPN 258 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.481 Gapped Lambda K H 0.267 0.0440 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,395,492 Number of extensions: 62702 Number of successful extensions: 215 Number of sequences better than 10.0: 1 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 24 Length of query: 131 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 49 Effective length of database: 3,705,222 Effective search space: 181555878 Effective search space used: 181555878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.2 bits)