RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780543|ref|YP_003064956.1| NADH dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
(131 letters)
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 7 QIFTWWNGQTLGTRFFTWRFGHIVGKDEFGN---TYYESRKNINGSSRRWVIYNGYTDPS 63
+ F WN L + + +D G G+ +W +
Sbjct: 217 KAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTG-KWTAISALEYGV 275
Query: 64 SIPPM 68
+ +
Sbjct: 276 PVTLI 280
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 26.2 bits (57), Expect = 2.4
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 29 IVGKDEFGNTYYESRKNINGSSRRWVIYNG 58
G D + T+Y + + ++W + +
Sbjct: 90 ATGPDIWNTTWYPKSADHVPTDKKWYVVDA 119
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 25.9 bits (57), Expect = 2.8
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 2 KNFLLQIFTWWNGQTLGTRFFT-----WRFGHIVGKDEFGNTYYESRKNINGSSRRWVIY 56
K L +F +WNG+T + R GN YY +++ + +
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNGVGHVSVDYGKVLRV 175
>2gz1_A Aspartate beta-semialdehyde dehydrogenase; aspartate pathway,
oxidoreductase; HET: NAP; 1.80A {Streptococcus
pneumoniae} SCOP: c.2.1.3 d.81.1.1 PDB: 2gyy_A* 2gz2_A*
2gz3_A*
Length = 366
Score = 25.7 bits (55), Expect = 3.6
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 18 GTRFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSIPPMWHGW-IHHR 76
+ + K ++ S + + Y + + P+
Sbjct: 216 DYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAA 275
Query: 77 RIGVPKAEEENSFDWQKPHCVNATGSLNSYYPRFRRDNMAG 117
G ++ + P +NA GS +++ R R+D A
Sbjct: 276 FPGAVLEDDVAHQIY--PQAINAVGSRDTFVGRIRKDLDAE 314
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 24.8 bits (54), Expect = 6.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 92 QKPHCVNATGSLNSYYPRFRR 112
+ V GSL ++P+F
Sbjct: 391 RSEVTVGVDGSLYKFHPKFCE 411
>1cza_N Hexokinase type I; structurally homologous domains; HET: GLC G6P
ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3
c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A*
1bg3_A* 2nzt_A*
Length = 917
Score = 24.8 bits (54), Expect = 6.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 78 IGVPKAEEENSFDWQKPHCVNATGSLNSYYPRFRR 112
+ +N + V GSL +P++ R
Sbjct: 391 GAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSR 425
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 24.2 bits (52), Expect = 8.3
Identities = 8/96 (8%), Positives = 20/96 (20%), Gaps = 3/96 (3%)
Query: 21 FFTWRFGHIVGKDEFGNTYYESRKNINGSSRR-WVIYNGYTDPSSIPPMWHGWIHHRRIG 79
+ + F H + G T+ + + P + +
Sbjct: 248 YPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFD--PRPHQYEFGRRGLEY 305
Query: 80 VPKAEEENSFDWQKPHCVNATGSLNSYYPRFRRDNM 115
++ + Q RR +
Sbjct: 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGV 341
>3nap_B Capsid protein; insect cripavirus, icosahedral virus; 2.50A
{Triatoma virus}
Length = 255
Score = 24.2 bits (51), Expect = 8.9
Identities = 3/36 (8%), Positives = 7/36 (19%)
Query: 4 FLLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTY 39
+ F W F+ + +
Sbjct: 88 QFIGSFLWNTSDIENKEIFSLKLPDALMSPMIREKL 123
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP:
d.23.1.2 PDB: 2q4m_A
Length = 217
Score = 24.1 bits (52), Expect = 9.0
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 20 RFFTWRFGHIVGKDEFGNTYYESRKNINGSSRRWVIYNGYTDPSSIP 66
F V D G R+ + RW ++ G +
Sbjct: 70 PVFGLH-DKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDL 115
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 24.3 bits (52), Expect = 9.8
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 5 LLQIFTWWNGQTLGTRFFTWRFGHIVGKDEFGNTY 39
L + G L F RF +G D GN
Sbjct: 224 LNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPN 258
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.137 0.481
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,395,492
Number of extensions: 62702
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 24
Length of query: 131
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 49
Effective length of database: 3,705,222
Effective search space: 181555878
Effective search space used: 181555878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)