RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(448 letters)
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 434
Score = 645 bits (1667), Expect = 0.0
Identities = 233/437 (53%), Positives = 317/437 (72%), Gaps = 4/437 (0%)
Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64
FGTDGIRG +N P+TP +++G A G + +V+IGKDTR+SGYMLE++L A
Sbjct: 1 LFGTDGIRGVANE-PLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAA 59
Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124
G T+AG+D +LG IP+PAVA LTR LRAD GV+ISASHNP++DNGIK F DGYK+ +
Sbjct: 60 GLTSAGVDVLLLGVIPTPAVAYLTRKLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDE 119
Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184
+E+ IE L++ +L + + IG R+D RYIE +K T P+D+ L GL+IV+DCA
Sbjct: 120 VEEEIEALIDKELELPPT-GEKIGRVYRIDDARGRYIEFLKSTFPKDL-LSGLKIVLDCA 177
Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG 244
NGA+YKVAPEVF ELGA+V+VI + P+G+NIN++CGST+ SLQ+ V E AD+GIA DG
Sbjct: 178 NGAAYKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDG 237
Query: 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSL 304
D DRVI VDEKG IV+GDQI+A+ AR+ L+GN +V TVMSN+GLE+ + LG+ L
Sbjct: 238 DADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKELGIKL 297
Query: 305 KRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVST 364
RT+VGDRY++E M +G N+GGEQSGHII D+ +TGDGL+ ALQ+L +K+ K +S
Sbjct: 298 VRTKVGDRYVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSE 357
Query: 365 ICHCFEEYPQFLRSVSVKD-TSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIM 423
+ + YPQ L +V VKD ++L + + AIA+AE EL G R++VR SGTE LIR+M
Sbjct: 358 LASDMKLYPQVLVNVRVKDKKALLENPRVQAAIAEAEKELGGEGRVLVRPSGTEPLIRVM 417
Query: 424 AEGDDLSRIKRIVDDLA 440
EG+D ++++ ++LA
Sbjct: 418 VEGEDEELVEKLAEELA 434
>gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 404 bits (1039), Expect = e-113
Identities = 203/457 (44%), Positives = 285/457 (62%), Gaps = 18/457 (3%)
Query: 1 MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60
MK+ FGTDGIRG + +TP F +++G A+G + R K +VV+G+DTRLS ML
Sbjct: 5 MKKLLFGTDGIRGVAG-EELTPEFALKLGRALGSVLRKKGA-PKVVVGRDTRLSSEMLAA 62
Query: 61 SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120
+L AG T+AG+D + LG +P+PAVA TR L AD GVMI+ASHNP + NGIK FG DG K
Sbjct: 63 ALAAGLTSAGIDVYDLGLVPTPAVAFATRKLGADAGVMITASHNPPEYNGIKFFGSDGGK 122
Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180
+S DIE+ IE +L +++ + +G KR+ DRYIE +K + D+ L+GL++V
Sbjct: 123 ISDDIEEEIEAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSLVDVDLKLRGLKVV 182
Query: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGI--NINLDCGSTNVLSLQRKVHEVRADI 238
VDCANGA+ VAP + ELGA+VV I P+G+ NIN + G T +L L + V E AD+
Sbjct: 183 VDCANGAAGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADL 242
Query: 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIA 298
GIA DGD DR+I+VDE+G V+GDQI+AL+A+ + + +VTTVMS++ LE+
Sbjct: 243 GIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEK--GKLPTVVTTVMSSLALEKIAK 300
Query: 299 GLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQY 358
LG + RT+VGD+YI E M+ NG GGE+SGHII D+ TGDGL+AAL VL + +
Sbjct: 301 KLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAES 360
Query: 359 DKPVSTIC-HCFEEYPQF-LRSVSVKDTS-------ILNSSS---IVQAIADAESELRGI 406
K +S + +YPQ +V V D +L V I + EL
Sbjct: 361 GKSLSELLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEELREAKKVDTIDGVKVELEDG 420
Query: 407 DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
R++VR SGTE LIR+ E D + + +++A+++
Sbjct: 421 GRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELV 457
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 439
Score = 306 bits (787), Expect = 6e-84
Identities = 156/463 (33%), Positives = 238/463 (51%), Gaps = 48/463 (10%)
Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64
FGT GIRG +TP +++G A+G G VV+G+DTR SG ML+N+++A
Sbjct: 1 LFGTSGIRGVVGEE-LTPELALKVGKALGTYLGGGT----VVVGRDTRTSGPMLKNAVIA 55
Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124
G +AG D +G +P+PA+ R D GVMI+ASHNP + NGIKL PDG + S +
Sbjct: 56 GLLSAGCDVIDIGIVPTPALQYAVRK-LGDAGVMITASHNPPEYNGIKLVNPDGTEFSRE 114
Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184
E+ IE ++ + ++ +D +G +R D D YIE + + D +GL++VVDC
Sbjct: 115 QEEEIEEIIFSERFRRVA-WDEVGSVRREDSAIDEYIEAILDKVDID-GGKGLKVVVDCG 172
Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNG---------ININLDCGSTNVLSLQRKVHEVR 235
NGA P + ELG V+ + P+G NL L V
Sbjct: 173 NGAGSLTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLS-------ELMELVRATG 225
Query: 236 ADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNG-IVTTVMSNIGLE 294
AD+GIA DGD DR + VDEKG ++GD+++AL+A+ + L G G +VT V +++ +E
Sbjct: 226 ADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAK----YLLEEGGGKVVTPVDASMLVE 281
Query: 295 RFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRY 354
+ G + RT VGD ++ E M NG GGE +G I D+ DG++ A +L
Sbjct: 282 DVVEEAGGEVIRTPVGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLEL 341
Query: 355 IKQYDKPVSTICHCFEEYPQ-FLRSVSVKDTSILNSSSIVQAIADAESELRG----ID-- 407
+ + KP+S + +E P+ L V + +++A+ + S+ ID
Sbjct: 342 LAEE-KPLSEL---LDELPKYPLLREKV-ECPDEKKEEVMEAVEEELSDADEDVDTIDGV 396
Query: 408 RLI-------VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
R+ +R SGTE IRI AE R K ++++ +
Sbjct: 397 RIEYEDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSKV 439
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model..
Length = 443
Score = 245 bits (629), Expect = 2e-65
Identities = 144/466 (30%), Positives = 224/466 (48%), Gaps = 62/466 (13%)
Query: 11 IRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAG 70
IRG + +T IG A G +K ++VV+G+D RLS L +L+ G AAG
Sbjct: 7 IRGIAGE-ELTEEIAYAIGRAFGSWLL-EKGAKKVVVGRDGRLSSPELAAALIEGLLAAG 64
Query: 71 MDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIE 130
D +G +P+P + T L AD GVMI+ASHNP + NG K+ G DI+ E
Sbjct: 65 CDVIDIGLVPTPVLYFATFHLDADGGVMITASHNPPEYNGFKIVIGGGPLSGEDIQALRE 124
Query: 131 TLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL--QGLRIVVDCANGAS 188
+ D + G ++VD + YI+ + D+ L + L++VVD NGA+
Sbjct: 125 RAEKGDFAA----ATGRGSVEKVD-ILPDYIDRLL----SDIKLGKRPLKVVVDAGNGAA 175
Query: 189 YKVAPEVFWELGADVVVI-----GDKPNGI-N----INLDCGSTNVLSLQRKVHEVRADI 238
+AP++ LG +V+ + G PN + NL+ L V E AD+
Sbjct: 176 GPIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLE-------DLIAAVKENGADL 228
Query: 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNG---IVTTVMSNIGLER 295
GIA DGDGDR+ +VDEKG I+ GD+++AL AR+ +L+ N IV V + L
Sbjct: 229 GIAFDGDGDRLGVVDEKGEIIWGDRLLALFARD-----ILKRNPGATIVYDVKCSRNLYD 283
Query: 296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD--YGSTGDGLVAALQVLR 353
FI G + G +I MK G + GE SGHI D YG DG+ AAL++L
Sbjct: 284 FIEEAGGKPIMWKTGHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFD-DGIYAALRLLE 342
Query: 354 YIKQYDKPVSTICHCFEEYPQFLRS----VSVKDT---SILNSSSIVQAIADAESELRGI 406
+ + K +S + + P++ + + V + +++ + + +E+ I
Sbjct: 343 LLSKSGKTLSEL---LADLPKYFSTPEIRIPVTEEDKFAVI--ERLKEHFEFPGAEIIDI 397
Query: 407 D---------RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
D +VRAS TE ++ + E D ++ I +L K++
Sbjct: 398 DGVRVDFEDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRKLL 443
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 355
Score = 242 bits (619), Expect = 2e-64
Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 36/372 (9%)
Query: 77 GPIPSPAVAM-LTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLED 135
G +P A+ L +++ + G+MI+ASHNP +DNGIK PDG ++++ E IE L E
Sbjct: 12 GDDITPETAVALGQAIGSTGGIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEK 71
Query: 136 DLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPE 194
+ Y+ G K VD + RY E +K+ ++ + ++VVD NG +AP+
Sbjct: 72 EDEPSAVAYELGGSVKAVD-ILQRYFEALKKLFDVAALSNKKFKVVVDSVNGVGGPIAPQ 130
Query: 195 VFWELGADVVVIGDKPNG--ININLDCGS-TNVLSLQRKVHEVRADIGIALDGDGDRVII 251
+ +LGA+V+ + +P+G NIN D GS TN+ L V +AD G+A DGD DR+I+
Sbjct: 131 LLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIV 190
Query: 252 VDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGD 311
VDE G ++GD+++AL+A E RG G+V TV+S+ L++ LG+ + RT+ G
Sbjct: 191 VDENGGFLDGDELLALLAVELFLTFNPRG-GVVKTVVSSGALDKVAKKLGIKVIRTKTGF 249
Query: 312 RYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE 371
+++ E M+ +GGE+SG +I ++ DG+ AAL +L + K +S + F E
Sbjct: 250 KWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSEL---FSE 306
Query: 372 YPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGD---D 428
P++ L+ ++VRASGTE IRI AE D D
Sbjct: 307 LPRY-----------------------YYIRLKVRGWVLVRASGTEPAIRIYAEADTQED 343
Query: 429 LSRIKRIVDDLA 440
+ +IK+ +L
Sbjct: 344 VEQIKKEARELV 355
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model..
Length = 461
Score = 197 bits (503), Expect = 5e-51
Identities = 144/479 (30%), Positives = 224/479 (46%), Gaps = 61/479 (12%)
Query: 6 FGTDGIRG---KSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLEN- 60
FGTDG RG + TF N + R+ A+ YL R VV+G DTR ++ E
Sbjct: 3 FGTDGWRGIIAEDFTFE---N-VRRVAQAIADYLKEEGGGGRGVVVGYDTR---FLSEEF 55
Query: 61 -SLVAG-FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPD 117
VA A G+D ++ P+P+PAV+ + L A GVMI+ASHNP + NG+K+
Sbjct: 56 ARAVAEVLAANGIDVYLSDRPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAF 115
Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL--- 174
G +I IE L + G + +D Y+E ++ + D+
Sbjct: 116 GGSALPEITAAIEARLA-SGEPPGLEARAEGLIETID-PKPDYLEALRSLV--DLEAIRE 171
Query: 175 QGLRIVVDCANGASYKVAPEVFWELGADVVVI---------GDKPNGININLDCGSTNVL 225
GL++VVD GA E+ G DV I G P I NL
Sbjct: 172 AGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLG------- 224
Query: 226 SLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVT 285
L V E AD+G+A DGD DR+ VDEKG ++ +QI+AL+ + + LRG +V
Sbjct: 225 ELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRG-PVVK 283
Query: 286 TV-MSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDG 344
TV +++ ++R GL + T VG +YI E M +GGE+SG + + + DG
Sbjct: 284 TVSTTHL-IDRIAEKHGLPVYETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDG 342
Query: 345 LVAALQVLRYIKQYDKPVSTICH-CFEEY-PQFLRSVSVKDT-----SILNSSSIVQAIA 397
++A L +L + + KP+S + EEY P + + ++ T +IL ++
Sbjct: 343 ILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDLRLTPAQKEAILEKLKNEPPLS 402
Query: 398 DAESELRGIDR-------------LIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
A ++ ++ L++R SGTE L+RI AE +++ ++D K+
Sbjct: 403 IAGGKVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKKLA 461
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 445
Score = 180 bits (459), Expect = 7e-46
Identities = 130/437 (29%), Positives = 209/437 (47%), Gaps = 24/437 (5%)
Query: 7 GTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGF 66
G GI G+ +TP + R A + K ++V+G+D R SG MLE ++
Sbjct: 6 GIRGIVGEG----LTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGAL 61
Query: 67 TAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIE 126
A G D LG P+P V +L R +A G++I+ASHNP Q NG+K GPDG ++ D
Sbjct: 62 LACGCDVIDLGIAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEG 121
Query: 127 DRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL---QGLRIVVDC 183
+ + + E YD +G + +I+ V + DV + ++ VD
Sbjct: 122 EEVLSCAEAGSAQKAG-YDQLGEVTFSEDAIAEHIDKVLALVDVDVIKIRERNFKVAVDS 180
Query: 184 ANGASYKVAPEVFWELGADVVVIGDKPNGI-NINLDCGSTNVLSLQRKVHEVRADIGIAL 242
NGA + P + +LG +V+V+ +P G+ + N+ L V E AD+G A+
Sbjct: 181 VNGAGGLLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGFAV 240
Query: 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGL 302
D D DR+ +VDE G + + +AL + + +G +V + ++ LE G+
Sbjct: 241 DPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGP-VVVNLSTSRALEDIARKHGV 299
Query: 303 SLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPV 362
+ R+ VG+ ++E MK +GGE +G +IL D D LV VL+ + KP+
Sbjct: 300 PVFRSAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPL 359
Query: 363 STICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIA----DAE-SELRG--ID----RLIV 411
S I +E PQ+ S + + +++ + DAE S L G +D + V
Sbjct: 360 SEIV---DELPQYYISKTKVTIAGEALERLLKKLEAYFKDAEASTLDGLRLDSEDSWVHV 416
Query: 412 RASGTESLIRIMAEGDD 428
R S TE ++RI+AE
Sbjct: 417 RPSNTEPIVRIIAEAPT 433
>gnl|CDD|145827 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain I.
Length = 138
Score = 164 bits (417), Expect = 5e-41
Identities = 58/132 (43%), Positives = 85/132 (64%)
Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSL 62
R+ FGT GIRGK +TP F +++G A+ R K +VV+G+DTR S L +L
Sbjct: 1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARAL 60
Query: 63 VAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS 122
AG A G++ +LG +P+PA++ TR L AD G+MI+ASHNP NGIK + DG +S
Sbjct: 61 AAGLAANGVEVILLGLLPTPALSFATRKLNADGGIMITASHNPPDYNGIKFYDSDGGPIS 120
Query: 123 TDIEDRIETLLE 134
++E++IE ++E
Sbjct: 121 PEVEEKIEAIIE 132
>gnl|CDD|145829 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 111
Score = 133 bits (338), Expect = 8e-32
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 4/114 (3%)
Query: 260 NGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMK 319
+GDQI+AL+AR + L+ +V TVMS++ L+R LG L RT+VGD+Y+ E M+
Sbjct: 1 DGDQILALLARYLLE---LKPGAVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKEKMR 57
Query: 320 NNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH-CFEEY 372
G +GGE+SGHII D+ +T DG++AAL VL + + K +S + + Y
Sbjct: 58 EEGAVLGGEESGHIIFLDFATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 441
Score = 129 bits (327), Expect = 1e-30
Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 56/468 (11%)
Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64
FG G+ G N ITP F R+G A G V + +D + ML+ +L++
Sbjct: 1 LFGGRGVSGLINV-DITPEFATRLGAAYGSTL---PPGSTVTVSRDASRASRMLKRALIS 56
Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNG---IKLFGPDGYKV 121
G + G++ LG +P P R L A G+ + S D I+ F G +
Sbjct: 57 GLLSTGVNVRDLGALPLPVARYAIRFLGASGGIHVRTS---PDDPDKVEIEFFDSRGLNI 113
Query: 122 STDIEDRIETLL--EDDLTSYLSC-YDSIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGL 177
S +E +IE ED + D IG + YI + R L + GL
Sbjct: 114 SRAMERKIENAFFRED----FRRAHVDEIGDITEPPDFVEYYIRGLLRALDTSGLKKSGL 169
Query: 178 RIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCG----STNVLSLQ----R 229
++V+D A G + V P + LG DVV++ N LD T R
Sbjct: 170 KVVIDYAYGVAGIVLPGLLSRLGCDVVIL-------NARLDEDAPRTDTERQRSLDRLGR 222
Query: 230 KVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMS 289
V + AD G+ +D +G+R+I+VDE G +++ D + AL++ + G +V V +
Sbjct: 223 IVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVS--LLVLKSEPGGTVVVPVTA 280
Query: 290 NIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAAL 349
+E+ G + RT+ + +ME N G G I + D + A +
Sbjct: 281 PSVIEQLAERYGGRVIRTKTSPQALMEAALENVVLAGDGDGGFIFPEFHP-GFDAIAALV 339
Query: 350 QVLRYIKQYDKPVSTICHCFEEYPQF-LRSVSV------KDTSILNSSSIVQAIADAESE 402
++L + + + +S I +E P+F + V K + +++ D E
Sbjct: 340 KILEMLARTNISLSQI---VDELPRFYVLHKEVPCPWEAKGRVM---RRLIEEAPDKSIE 393
Query: 403 L-RGI------DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
L G+ ++V E L I AEG D R + + + + +
Sbjct: 394 LIDGVKIYEDDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEKV 441
>gnl|CDD|36434 KOG1220, KOG1220, KOG1220, Phosphoglucomutase/phosphomannomutase
[Carbohydrate transport and metabolism].
Length = 607
Score = 123 bits (309), Expect = 1e-28
Identities = 95/385 (24%), Positives = 167/385 (43%), Gaps = 36/385 (9%)
Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVG---YLFRG-KKKHRRVVIGKDTRLSGYML 58
R FGT G+RG+ N + I G YL K+ +VIG D R +
Sbjct: 59 RIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRF 118
Query: 59 ENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPD 117
+ A F G ++ +P+P V +L AD G+MI+ASHNP +DNG K++ +
Sbjct: 119 AELVAAVFLLNGFKVYLFSELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGYKVYWSN 178
Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDS---IGHAKRVD---GVHDRYIEHVKRTLPR- 170
G ++ + +++I +E +L LS +D H D + Y E K LP
Sbjct: 179 GAQIISPHDEKISDSIEANLEPRLSSWDDSLVKSHPLLHDILAVIIPPYFEVYKELLPCF 238
Query: 171 ---DVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK---PNGININL---DCGS 221
L GL+ V +G + +LG D ++ + P+ + + +
Sbjct: 239 HREANPLSGLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPTVPFPNPEE 298
Query: 222 TNVLSLQRK-VHEVRADIGIALDGDGDRVIIVDE---KGAIVNGDQIMALIA----REWM 273
L L K + AD+ +A D D DR + ++ + + NG+++ AL++ E
Sbjct: 299 KGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHK 358
Query: 274 SHSLLRGNGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYI----MEYMKNNGFNV-GG 327
+ ++ ++ + +S+ GL RFIA G + T G +++ +E K+
Sbjct: 359 GSTPVQDVSMLNSTVSS-GLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAF 417
Query: 328 EQSGHIILSDYGSTGDGLVAALQVL 352
E+S + + DG+ AA++
Sbjct: 418 EESIGYMFGENHLDKDGVSAAVKFA 442
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 487
Score = 122 bits (309), Expect = 2e-28
Identities = 117/477 (24%), Positives = 197/477 (41%), Gaps = 85/477 (17%)
Query: 6 FGTDGIRGKS-------NTFPITPNFMMRIGIAVGYLFR--GKKKHRRVVIGKDTRLSGY 56
FGT G+RGK N + + G+A YL + K+R VVIG D+R
Sbjct: 4 FGTAGLRGKMGAGTNRMNDYTVR---QATQGLAN-YLKKKGPDAKNRGVVIGYDSRH--- 56
Query: 57 MLENS-----LVAG-FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDN 109
NS L A A G+ ++ P+P ++ R L AD G+MI+ASHNP + N
Sbjct: 57 ---NSREFAELTAAVLAANGIKVYLFDDLRPTPLLSFAVRHLGADAGIMITASHNPKEYN 113
Query: 110 GIKLFGPDGYKVSTDIEDRIETLLE---DDLTSYLSCYDSIGHAKRVD-GVHDRYIEHVK 165
G K++ DG ++ + I +E + L G K + + D Y+E VK
Sbjct: 114 GYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKYIGEEIDDAYLEAVK 173
Query: 166 RTLPRD--VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGD---KPNGININLDCG 220
+ L + L+IV +G K P E G V++ + +P+
Sbjct: 174 KLLVNPELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDP-------D 226
Query: 221 STNV------------LSLQRKVHEVRADIGIALDGDGDR--VIIVDEKGA--IVNGDQI 264
V L+++ +V AD+ +A D D DR V + D+ G ++ G++I
Sbjct: 227 FPTVKFPNPEEPGALDLAIE-LAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEI 285
Query: 265 MALIA----REWMSHSLLRGNGIV--TTVMSNIGLERFIAGLGLSLKRTEVGDRYI---M 315
AL+A + L N ++ T V S + L + G+ ++ T G ++I +
Sbjct: 286 GALLADYLLEQRKEKGKLPKNPVIVKTIVSSEL-LRKIAKKYGVKVEETLTGFKWIGNKI 344
Query: 316 EYMKNNGFNV--GGEQS-GHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH----C 368
E +++ G G E+S G+++ + DG+ AA + T+
Sbjct: 345 EELESGGKKFLFGFEESIGYLV-GPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDEL 403
Query: 369 FEEYPQFL-RSVSVKDTSILNSSSIVQAIADAESE-------LRGIDRLIVRASGTE 417
+E+Y + +++S+ I + + L R+ VR SGTE
Sbjct: 404 YEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTVRPSGTE 460
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 459
Score = 111 bits (280), Expect = 4e-25
Identities = 111/473 (23%), Positives = 179/473 (37%), Gaps = 61/473 (12%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
FGT G+RG T A K V +G+D R S + + A
Sbjct: 2 FGTSGLRGLVTDL--TDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAA 59
Query: 66 FTAAGMDAFILGPIPSPAVAMLTRSLRADVG-VMISASHNPYQDNGIKLFGPDGYKVSTD 124
AG G +P+PA+A+ +++ +M++ SH P NG+K + PDG +++
Sbjct: 60 LRDAGFRVVDCGAVPTPALAL--YAMKRGAPAIMVTGSHIPADRNGLKFYRPDG-EITKA 116
Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184
E I L + + + D YI L+GLRI V
Sbjct: 117 DEAAILAALVELPEALFD--PAGALLPPDTDAADAYIARYTDFFGAG-ALKGLRIGVYQH 173
Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRK-VHEVRADIGIALD 243
+ + + LGA+VV +G I ++ + +L E D ++ D
Sbjct: 174 SSVGRDLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTD 233
Query: 244 GDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLS 303
GDGDR ++ DE G + GD I+ L+ + L + +VT V SN +E +G
Sbjct: 234 GDGDRPLVADETGEWLRGD-ILGLLTARF-----LGADTVVTPVSSNSAIEL--SGFFKR 285
Query: 304 LKRTEVGDRYI---MEYMKNNGFN--VGGEQSGHIIL-SDYGS---------TGDGLVAA 348
+ RT +G Y+ M G VG E +G +L SD T D ++
Sbjct: 286 VVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPI 345
Query: 349 LQVLRYIKQYDKPVSTICHCFEEYPQ-FLRSVSVKD------TSIL-----NSSSIVQAI 396
L VL K+ P+S + P F S +++ +++ + +
Sbjct: 346 LAVLAAAKEAGIPLSELVA---SLPARFTASDRLQNFPTEKSQALIARLSADPEARAAFF 402
Query: 397 ADAESELRGIDRL-----------IV--RASGTESLIRIMAEGDDLSRIKRIV 436
E+ ID IV R SG +R E D R + ++
Sbjct: 403 FALGGEVASIDTTDGLRMTFANGDIVHLRPSGNAPELRCYVEADSEERARELL 455
>gnl|CDD|30382 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 103 bits (258), Expect = 1e-22
Identities = 90/355 (25%), Positives = 146/355 (41%), Gaps = 33/355 (9%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
FGT G RG + F N ++ A+ +V+G DT S +
Sbjct: 18 FGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEV 77
Query: 66 FTAAGMDAFILGP---IPSPAV--AMLTRSLR----ADVGVMISASHNPYQDNGIKLFGP 116
A G++ + G P+PA A+LT + + AD G++++ SHNP +D GIK P
Sbjct: 78 LAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALAD-GIVLTPSHNPPEDGGIKYNPP 136
Query: 117 DGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDG----VHD---RYIEHVKRTLP 169
+G + D IE D L IG + + D Y+E ++
Sbjct: 137 NGGPAPEKVTDAIEARANDLYKIGLLDVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFD 196
Query: 170 RDVTLQ-GLRIVVDCANGASYKVAPEVF-WELGADVVVI----------GDKPNGININL 217
D + GLR+ D G + + L V G P+G NI +
Sbjct: 197 FDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQNVDPTPDFMGLDPDG-NIRM 255
Query: 218 DCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSL 277
DC S ++ ++ + + D A DGDGDR IV ++N + +A+ H
Sbjct: 256 DCSSPCAMAGLLRLRD-KYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRP 314
Query: 278 LRGN--GIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQS 330
G + T++S+ ++R +A LG L VG ++ ++ + F GGE+S
Sbjct: 315 YWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEES 369
>gnl|CDD|145828 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain II.
Length = 103
Score = 90.1 bits (224), Expect = 1e-18
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 158 DRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ 216
D YI+ + + + +GL++V D +G ++ PE+ LGA+VV +P+G
Sbjct: 1 DAYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAEVVEENCEPDGDFPT 60
Query: 217 LDC---GSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKG 256
+ L V EV AD+GIA DGD DR+ +VDEKG
Sbjct: 61 KAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGVVDEKG 103
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 522
Score = 71.1 bits (175), Expect = 6e-13
Identities = 102/420 (24%), Positives = 156/420 (37%), Gaps = 113/420 (26%)
Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAV----------GYLFRGKKKHRRVVIGKDTR 52
R FGT G RG S ++ I A+ G LF +GKDT
Sbjct: 20 RVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLF----------LGKDTH 69
Query: 53 -LSGYMLENSLVAGFTAAGMDAFI---LGPIPSPAV--AMLT-----RSLRADVGVMISA 101
LS S + A G++ I G P+P + A+LT AD G++I+
Sbjct: 70 ALSEPAF-ISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGLAD-GIVITP 127
Query: 102 SHNPYQDNGIKLFGPDG----YKVSTDIEDRIETLLEDDLT-----SYLSCYDSIGHAKR 152
SHNP +D G K P G ++ IE R LL + L + S G+ R
Sbjct: 128 SHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRIPLEAALAS-GYTHR 186
Query: 153 VDGVHDRYIEHVKRTLPRDVTLQ-----GLRIVVDCANGASYKVAPEVFWELGADVVVIG 207
D ++ L + + GLR+ VD GAS W+ I
Sbjct: 187 HD-----FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPY-----WQP------IA 230
Query: 208 DKPNGININL----------------------DCGS----TNVLSLQRKVHEVRADIGIA 241
+K G+N+ + DC S +L L+ K D+ A
Sbjct: 231 EKY-GLNLTVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKLKDKF-----DLAFA 284
Query: 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR-------GNGIVTTVMSNIGLE 294
D D DR IV ++N + +++ L G+ T++S+ ++
Sbjct: 285 NDPDADRHGIVTPSAGLMNPNHYLSV-----AIDYLFTHRPLWNKSAGVGKTLVSSSMID 339
Query: 295 RFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQS-GHIILSDYGST----GDGLVAAL 349
R A LG L VG ++ ++ + + GGE+S G L G+ DG++ L
Sbjct: 340 RVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399
>gnl|CDD|35844 KOG0625, KOG0625, KOG0625, Phosphoglucomutase [Carbohydrate
transport and metabolism].
Length = 558
Score = 68.0 bits (166), Expect = 5e-12
Identities = 96/383 (25%), Positives = 153/383 (39%), Gaps = 49/383 (12%)
Query: 7 GTDGIRGKSNTFP---ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63
GT G+R K F T NF+ I A+ K K +V+G D R +
Sbjct: 19 GTSGLRKKVKVFKQPNYTENFVQAIMNALP---GEKSKGATLVVGGDGRYYNKEAIQIIA 75
Query: 64 AGFTAAGMDAFILGP---IPSPAVAMLTRS-LRADVGVMISASHN---PYQDNGIKLFGP 116
A G+ I+G + +PAV+ + R ++A G++++ASHN P D GIK
Sbjct: 76 KIAAANGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLE 135
Query: 117 DGYKVSTDIEDRIETLLEDDLTSYLSCYD------SIGHAKR--------VDGVHDRYIE 162
+G + D+I + + ++ Y D ++G +D V D Y+
Sbjct: 136 NGGPAPESVTDKIYEITKT-ISEYKIAKDPKIDLSTVGKTSFDGPFTVEVIDPVKD-YVN 193
Query: 163 HVKRTLPRDV------TLQGLRIVVDCANGASYKVAPEVFW-ELGADVVVIGD---KPNG 212
+K D+ + L+ D +G + +F ELGA + + +
Sbjct: 194 LMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPLEDF 253
Query: 213 ININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREW 272
+ D T L +V D G A DGDGDR +I+ + G V +A+IA
Sbjct: 254 GGGHPDPNLTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANA 313
Query: 273 MSHSLLRGNGI--VTTVMSNIG-LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQ 329
+ R G+ M G L+R LGL + G ++ M ++ GE+
Sbjct: 314 EAIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEE 373
Query: 330 S---GHIILSDYGSTGDGLVAAL 349
S G SD+ DG+ A L
Sbjct: 374 SFGTG----SDHIREKDGIWAVL 392
>gnl|CDD|144122 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
C-terminal domain.
Length = 71
Score = 55.4 bits (134), Expect = 3e-08
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 386 ILNSSSIVQAIADAESELRGID--RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
+ ++++A A+A L D RL+VR SGTE ++R+ E DD + ++ I ++A+++
Sbjct: 12 VAALEALLKAFAEALKIL-FEDGRRLVVRPSGTEPVLRVYVEADDEAELEEIAAEVAELL 70
>gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase
[Carbohydrate transport and metabolism].
Length = 539
Score = 55.3 bits (133), Expect = 3e-08
Identities = 91/467 (19%), Positives = 162/467 (34%), Gaps = 112/467 (23%)
Query: 38 GKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGV 97
G VV+G+DTR S L N++ G A G + +P + + R+
Sbjct: 120 GTTVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRAS------ 173
Query: 98 MISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVH 157
N G +GY Y + A
Sbjct: 174 ------NTKGAYGKGKPTEEGY------------------------YSKLSKAFNE---- 199
Query: 158 DRYIEHVKRTLPRDVTLQGLRIVVDCANG-ASYKVAPEVFWELGA-DVVVIGDKPNGINI 215
R + ++ + +++VDCANG + K+ + + G +V V+ D + +
Sbjct: 200 -------LRNITQESGDEVSKLIVDCANGVGAPKLKELLGIDSGLLNVEVVNDGIDPGLL 252
Query: 216 NLDCGSTNVLSLQR--------KVHEVRADIGIALDGDGDRVII--VDEKGA--IVNGDQ 263
N CG+ V + Q+ K + A + DGD DR++ +D+ +++GD+
Sbjct: 253 NNGCGADFVKTKQKPPKGLSPIKANTRCA----SFDGDADRLVYFYIDDDSEFHLLDGDK 308
Query: 264 IMALIA---REWMSHSLLRGN-GIVTTVMSNIGLERFIA-GLGLSLKRTEVGDRYIMEYM 318
I LIA RE + L G+V T +N ++ L + G +++
Sbjct: 309 IATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVPTGVKHLHHAA 368
Query: 319 KNNGFNVGGEQSGH--IILSDYG-------------------------------STGDGL 345
+ E +GH I+ S+ + GD +
Sbjct: 369 AEFDIGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAI 428
Query: 346 VAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSI---------VQAI 396
L V + V + + P V V D SI+ ++ +Q
Sbjct: 429 SDMLAVEAILAHKGWSVQDWDELYRDLPNRQLKVKVPDRSIIKTTDAERQLVKPVGLQDK 488
Query: 397 ADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
DA R VR SGTE ++R+ AE ++ ++A+++
Sbjct: 489 IDALVAKYKRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVAQLV 535
Score = 48.0 bits (114), Expect = 5e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 95 VGVMISASHNPYQDNGIKLFGPDGYKVSTDIED 127
+GVMI+ASHNP +DNG+K+ P G ++ E+
Sbjct: 61 IGVMITASHNPVEDNGVKIVDPSGEMLAASWEE 93
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model..
Length = 513
Score = 54.5 bits (132), Expect = 6e-08
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 95 VGVMISASHNPYQDNGIKLFGPDG 118
+GVMI+ASHNP +DNG+K+ PDG
Sbjct: 37 IGVMITASHNPVEDNGVKIVDPDG 60
Score = 51.8 bits (125), Expect = 3e-07
Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 72/267 (26%)
Query: 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASH 103
V +G+DTR SG L +L+ G A G + G + +P + L R+
Sbjct: 104 NVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAA------------ 151
Query: 104 NPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEH 163
N +G E Y Y+ + A + E
Sbjct: 152 -----NTEGAYG------------------EPTEEGY---YEKLSKA---------FNEL 176
Query: 164 VKRTLPRDVTLQGLRIVVDCANG-ASYKVAP-EVFWELGADVVVIGD-KPNGININLDCG 220
L +D + ++VVDCANG + K+ + G V +I D + +N CG
Sbjct: 177 YN--LLQDGGDEPEKLVVDCANGVGALKLKELLKRLKKGLSVKIINDGEEGPELLNDGCG 234
Query: 221 STNVLSLQR-------KVHEVRADIGIALDGDGDRVI--IVDEKGA--IVNGDQIMALIA 269
+ V + Q+ K VR + DGD DR++ D +++GD+I L A
Sbjct: 235 ADYVKTKQKPPRGFELKPPGVRC---CSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFA 291
Query: 270 ---REWMSHSLLRGN---GIVTTVMSN 290
+E + + G+V T +N
Sbjct: 292 KFIKELLKKAGEELKLTIGVVQTAYAN 318
Score = 37.6 bits (88), Expect = 0.008
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 23/93 (24%)
Query: 367 HCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESEL---RG----IDRLI--------- 410
+ + + P V V D S++ ++ DAE L +G ID ++
Sbjct: 428 NLYTDLPNRQLKVKVPDRSVIKTT-------DAERRLVEPKGLQDKIDAIVAKYNNGRAF 480
Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
VR SGTE ++R+ AE + +++A+++
Sbjct: 481 VRPSGTEDVVRVYAEAATQEEADELANEVAELV 513
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 548
Score = 48.0 bits (115), Expect = 6e-06
Identities = 82/305 (26%), Positives = 130/305 (42%), Gaps = 57/305 (18%)
Query: 7 GTDGIRGKSNTFP---ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLE--NS 61
GT G+R K F NF+ I A+ K K +V+G D R Y E
Sbjct: 14 GTSGLRKKVKVFQQPNYLENFVQSIFNALP---PEKLKGATLVVGGDGRY--YNKEAIQI 68
Query: 62 LVAGFTAAGMDAFILGP---IPSPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLF- 114
++ A G+ ++G + +PAV+ + R +A G++++ASHNP D GIK +
Sbjct: 69 IIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIK-YN 127
Query: 115 ------GPDG-----YKVSTDIED-RIETLLEDDLTSYLSCYDSIGHAKR---------V 153
P+ Y+++ I + +I + DL IG K +
Sbjct: 128 TSNGGPAPESVTDKIYEITKKITEYKIADDPDVDL-------SKIGVTKFGGKPFTVEVI 180
Query: 154 DGVHDRYIEHVKR-----TLPRDVTLQGLRIVVDCANGASYKVAPEVFW-ELGA--DVVV 205
D V D Y+E +K + + ++ +G ++ D +G + A ++F ELGA VV
Sbjct: 181 DSVED-YVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVV 239
Query: 206 IGD-KPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQI 264
P+ + D T L + D G A DGDGDR +I+ KG V
Sbjct: 240 NCTPLPDFGGGHPDPNLTYAKDLVELMKSGEPDFGAASDGDGDRNMILG-KGFFVTPSDS 298
Query: 265 MALIA 269
+A+IA
Sbjct: 299 VAVIA 303
>gnl|CDD|37077 KOG1866, KOG1866, KOG1866, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 944
Score = 30.7 bits (69), Expect = 0.82
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 25 MMRIGIAVGYLFRG---KKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS 81
++ I +A +LF KKH R L L F + S
Sbjct: 511 LISIQLASQFLFTTGFRTKKHLR----GPASEWYDALCRLLRHSKNVRKW--FAHNVLFS 564
Query: 82 PAVAMLTRSLRA----DVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL 137
+ + L V +++ +H D L D +S + + + LL+ D+
Sbjct: 565 VSSELSEYLLECPSVRFVKLIVFIAHFSLLDGP--LPSYDNLSLSDQLLEAVLNLLDRDV 622
Query: 138 TSY 140
+ +
Sbjct: 623 SEH 625
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 28.6 bits (64), Expect = 3.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE 162
+ + EDR+ LL++ + +S +GH + HDR ++
Sbjct: 122 LDEESEDRLYQLLKELGITVIS----VGHRPSLWKFHDRVLD 159
>gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6
proteins.
Length = 566
Score = 28.1 bits (63), Expect = 4.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 359 DKPVSTICH--CFEEYPQFLRSVSVKDTSILNSSSIVQAI 396
D + I H C E+ F+R + K++SIL SI++ I
Sbjct: 479 DIILKIISHLKCVEDVTTFVRFATCKNSSIL--PSIIRTI 516
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 28.0 bits (63), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 315 MEYMKNNGF--------NVGGEQSGHIILSDY 338
+EY+ G N+ +SGHI+LSD+
Sbjct: 116 LEYLHLLGIVYRDLKPENILLHESGHIMLSDF 147
>gnl|CDD|36524 KOG1310, KOG1310, KOG1310, WD40 repeat protein [General function
prediction only].
Length = 758
Score = 27.8 bits (61), Expect = 6.4
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 380 SVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIV 436
SVK N+ ++ D +L +D R+KRI
Sbjct: 98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA 154
>gnl|CDD|147016 pfam04654, DUF599, Protein of unknown function, DUF599. This
family includes several uncharacterized proteins.
Length = 216
Score = 27.5 bits (62), Expect = 7.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 263 QIMALIAREWMSHSLLRGNGIV-TTVMSN 290
IMA R WM L R ++ ++ N
Sbjct: 30 GIMARYRRAWMRRMLTREVRVLDVQILRN 58
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 27.5 bits (61), Expect = 7.7
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 383 DTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKV 442
D + L I++A D + +G I+ +GT + I+ G ++I+ +++ L
Sbjct: 417 DPTQLAQGIILEAHLD---KTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNK 473
Query: 443 I 443
I
Sbjct: 474 I 474
>gnl|CDD|30427 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport
and metabolism].
Length = 310
Score = 27.4 bits (61), Expect = 8.5
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 60 NSLVAGFTAAGMDAFILGPI---PSPAVAMLTRSLRADVGVMISASHNPYQ 107
NSL+ GMD I P P P V + + G I+ + +P +
Sbjct: 167 NSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEE 217
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 27.2 bits (60), Expect = 9.4
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKR 166
+ + EDR+ LL+++L + S+GH + H R +E +
Sbjct: 546 LDEETEDRLYQLLKEELPD--ATVISVGHRPTLWNFHSRQLELLDD 589
>gnl|CDD|144473 pfam00888, Cullin, Cullin family.
Length = 605
Score = 27.2 bits (60), Expect = 9.7
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 351 VLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLI 410
V ++ +DK S + F FL ++ +NS + AE + D L+
Sbjct: 304 VQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINS----NSSKSAELLAKYCDSLL 359
Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDD 438
+ S + + + D + + + ++D
Sbjct: 360 KKGSKGLNEEELEEKLDKIIVLFKYIED 387
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.140 0.403
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,376,187
Number of extensions: 298996
Number of successful extensions: 932
Number of sequences better than 10.0: 1
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 44
Length of query: 448
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 351
Effective length of database: 4,167,664
Effective search space: 1462850064
Effective search space used: 1462850064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)