RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62] (448 letters) >gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 434 Score = 645 bits (1667), Expect = 0.0 Identities = 233/437 (53%), Positives = 317/437 (72%), Gaps = 4/437 (0%) Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64 FGTDGIRG +N P+TP +++G A G + +V+IGKDTR+SGYMLE++L A Sbjct: 1 LFGTDGIRGVANE-PLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAA 59 Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124 G T+AG+D +LG IP+PAVA LTR LRAD GV+ISASHNP++DNGIK F DGYK+ + Sbjct: 60 GLTSAGVDVLLLGVIPTPAVAYLTRKLRADAGVVISASHNPFEDNGIKFFSSDGYKLPDE 119 Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184 +E+ IE L++ +L + + IG R+D RYIE +K T P+D+ L GL+IV+DCA Sbjct: 120 VEEEIEALIDKELELPPT-GEKIGRVYRIDDARGRYIEFLKSTFPKDL-LSGLKIVLDCA 177 Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDG 244 NGA+YKVAPEVF ELGA+V+VI + P+G+NIN++CGST+ SLQ+ V E AD+GIA DG Sbjct: 178 NGAAYKVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQKAVLENGADLGIAFDG 237 Query: 245 DGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSL 304 D DRVI VDEKG IV+GDQI+A+ AR+ L+GN +V TVMSN+GLE+ + LG+ L Sbjct: 238 DADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKELGIKL 297 Query: 305 KRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVST 364 RT+VGDRY++E M +G N+GGEQSGHII D+ +TGDGL+ ALQ+L +K+ K +S Sbjct: 298 VRTKVGDRYVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSE 357 Query: 365 ICHCFEEYPQFLRSVSVKD-TSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIM 423 + + YPQ L +V VKD ++L + + AIA+AE EL G R++VR SGTE LIR+M Sbjct: 358 LASDMKLYPQVLVNVRVKDKKALLENPRVQAAIAEAEKELGGEGRVLVRPSGTEPLIRVM 417 Query: 424 AEGDDLSRIKRIVDDLA 440 EG+D ++++ ++LA Sbjct: 418 VEGEDEELVEKLAEELA 434 >gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism]. Length = 464 Score = 404 bits (1039), Expect = e-113 Identities = 203/457 (44%), Positives = 285/457 (62%), Gaps = 18/457 (3%) Query: 1 MKRRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLEN 60 MK+ FGTDGIRG + +TP F +++G A+G + R K +VV+G+DTRLS ML Sbjct: 5 MKKLLFGTDGIRGVAG-EELTPEFALKLGRALGSVLRKKGA-PKVVVGRDTRLSSEMLAA 62 Query: 61 SLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYK 120 +L AG T+AG+D + LG +P+PAVA TR L AD GVMI+ASHNP + NGIK FG DG K Sbjct: 63 ALAAGLTSAGIDVYDLGLVPTPAVAFATRKLGADAGVMITASHNPPEYNGIKFFGSDGGK 122 Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIV 180 +S DIE+ IE +L +++ + +G KR+ DRYIE +K + D+ L+GL++V Sbjct: 123 ISDDIEEEIEAILAEEVDLPRPSWGELGRLKRIPDALDRYIEFIKSLVDVDLKLRGLKVV 182 Query: 181 VDCANGASYKVAPEVFWELGADVVVIGDKPNGI--NINLDCGSTNVLSLQRKVHEVRADI 238 VDCANGA+ VAP + ELGA+VV I P+G+ NIN + G T +L L + V E AD+ Sbjct: 183 VDCANGAAGLVAPRLLKELGAEVVSINCDPDGLFPNINPNPGETELLDLAKAVKEHGADL 242 Query: 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIA 298 GIA DGD DR+I+VDE+G V+GDQI+AL+A+ + + +VTTVMS++ LE+ Sbjct: 243 GIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEK--GKLPTVVTTVMSSLALEKIAK 300 Query: 299 GLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQY 358 LG + RT+VGD+YI E M+ NG GGE+SGHII D+ TGDGL+AAL VL + + Sbjct: 301 KLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAES 360 Query: 359 DKPVSTIC-HCFEEYPQF-LRSVSVKDTS-------ILNSSS---IVQAIADAESELRGI 406 K +S + +YPQ +V V D +L V I + EL Sbjct: 361 GKSLSELLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEELREAKKVDTIDGVKVELEDG 420 Query: 407 DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 R++VR SGTE LIR+ E D + + +++A+++ Sbjct: 421 GRVLVRPSGTEPLIRVYVEAKDEELAEELAEEIAELV 457 >gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 439 Score = 306 bits (787), Expect = 6e-84 Identities = 156/463 (33%), Positives = 238/463 (51%), Gaps = 48/463 (10%) Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64 FGT GIRG +TP +++G A+G G VV+G+DTR SG ML+N+++A Sbjct: 1 LFGTSGIRGVVGEE-LTPELALKVGKALGTYLGGGT----VVVGRDTRTSGPMLKNAVIA 55 Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124 G +AG D +G +P+PA+ R D GVMI+ASHNP + NGIKL PDG + S + Sbjct: 56 GLLSAGCDVIDIGIVPTPALQYAVRK-LGDAGVMITASHNPPEYNGIKLVNPDGTEFSRE 114 Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184 E+ IE ++ + ++ +D +G +R D D YIE + + D +GL++VVDC Sbjct: 115 QEEEIEEIIFSERFRRVA-WDEVGSVRREDSAIDEYIEAILDKVDID-GGKGLKVVVDCG 172 Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNG---------ININLDCGSTNVLSLQRKVHEVR 235 NGA P + ELG V+ + P+G NL L V Sbjct: 173 NGAGSLTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLS-------ELMELVRATG 225 Query: 236 ADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNG-IVTTVMSNIGLE 294 AD+GIA DGD DR + VDEKG ++GD+++AL+A+ + L G G +VT V +++ +E Sbjct: 226 ADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAK----YLLEEGGGKVVTPVDASMLVE 281 Query: 295 RFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRY 354 + G + RT VGD ++ E M NG GGE +G I D+ DG++ A +L Sbjct: 282 DVVEEAGGEVIRTPVGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLEL 341 Query: 355 IKQYDKPVSTICHCFEEYPQ-FLRSVSVKDTSILNSSSIVQAIADAESELRG----ID-- 407 + + KP+S + +E P+ L V + +++A+ + S+ ID Sbjct: 342 LAEE-KPLSEL---LDELPKYPLLREKV-ECPDEKKEEVMEAVEEELSDADEDVDTIDGV 396 Query: 408 RLI-------VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 R+ +R SGTE IRI AE R K ++++ + Sbjct: 397 RIEYEDGWVLIRPSGTEPKIRITAEAKTEERAKELLEEGRSKV 439 >gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 443 Score = 245 bits (629), Expect = 2e-65 Identities = 144/466 (30%), Positives = 224/466 (48%), Gaps = 62/466 (13%) Query: 11 IRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAG 70 IRG + +T IG A G +K ++VV+G+D RLS L +L+ G AAG Sbjct: 7 IRGIAGE-ELTEEIAYAIGRAFGSWLL-EKGAKKVVVGRDGRLSSPELAAALIEGLLAAG 64 Query: 71 MDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIE 130 D +G +P+P + T L AD GVMI+ASHNP + NG K+ G DI+ E Sbjct: 65 CDVIDIGLVPTPVLYFATFHLDADGGVMITASHNPPEYNGFKIVIGGGPLSGEDIQALRE 124 Query: 131 TLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL--QGLRIVVDCANGAS 188 + D + G ++VD + YI+ + D+ L + L++VVD NGA+ Sbjct: 125 RAEKGDFAA----ATGRGSVEKVD-ILPDYIDRLL----SDIKLGKRPLKVVVDAGNGAA 175 Query: 189 YKVAPEVFWELGADVVVI-----GDKPNGI-N----INLDCGSTNVLSLQRKVHEVRADI 238 +AP++ LG +V+ + G PN + NL+ L V E AD+ Sbjct: 176 GPIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLE-------DLIAAVKENGADL 228 Query: 239 GIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNG---IVTTVMSNIGLER 295 GIA DGDGDR+ +VDEKG I+ GD+++AL AR+ +L+ N IV V + L Sbjct: 229 GIAFDGDGDRLGVVDEKGEIIWGDRLLALFARD-----ILKRNPGATIVYDVKCSRNLYD 283 Query: 296 FIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD--YGSTGDGLVAALQVLR 353 FI G + G +I MK G + GE SGHI D YG DG+ AAL++L Sbjct: 284 FIEEAGGKPIMWKTGHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFD-DGIYAALRLLE 342 Query: 354 YIKQYDKPVSTICHCFEEYPQFLRS----VSVKDT---SILNSSSIVQAIADAESELRGI 406 + + K +S + + P++ + + V + +++ + + +E+ I Sbjct: 343 LLSKSGKTLSEL---LADLPKYFSTPEIRIPVTEEDKFAVI--ERLKEHFEFPGAEIIDI 397 Query: 407 D---------RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 D +VRAS TE ++ + E D ++ I +L K++ Sbjct: 398 DGVRVDFEDGWGLVRASNTEPVLVLRFEADTEEGLEEIKAELRKLL 443 >gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 355 Score = 242 bits (619), Expect = 2e-64 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 36/372 (9%) Query: 77 GPIPSPAVAM-LTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLED 135 G +P A+ L +++ + G+MI+ASHNP +DNGIK PDG ++++ E IE L E Sbjct: 12 GDDITPETAVALGQAIGSTGGIMITASHNPPEDNGIKFVDPDGEPIASEEEKAIEDLAEK 71 Query: 136 DLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPE 194 + Y+ G K VD + RY E +K+ ++ + ++VVD NG +AP+ Sbjct: 72 EDEPSAVAYELGGSVKAVD-ILQRYFEALKKLFDVAALSNKKFKVVVDSVNGVGGPIAPQ 130 Query: 195 VFWELGADVVVIGDKPNG--ININLDCGS-TNVLSLQRKVHEVRADIGIALDGDGDRVII 251 + +LGA+V+ + +P+G NIN D GS TN+ L V +AD G+A DGD DR+I+ Sbjct: 131 LLEKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIV 190 Query: 252 VDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGD 311 VDE G ++GD+++AL+A E RG G+V TV+S+ L++ LG+ + RT+ G Sbjct: 191 VDENGGFLDGDELLALLAVELFLTFNPRG-GVVKTVVSSGALDKVAKKLGIKVIRTKTGF 249 Query: 312 RYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE 371 +++ E M+ +GGE+SG +I ++ DG+ AAL +L + K +S + F E Sbjct: 250 KWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSEL---FSE 306 Query: 372 YPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGD---D 428 P++ L+ ++VRASGTE IRI AE D D Sbjct: 307 LPRY-----------------------YYIRLKVRGWVLVRASGTEPAIRIYAEADTQED 343 Query: 429 LSRIKRIVDDLA 440 + +IK+ +L Sbjct: 344 VEQIKKEARELV 355 >gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.. Length = 461 Score = 197 bits (503), Expect = 5e-51 Identities = 144/479 (30%), Positives = 224/479 (46%), Gaps = 61/479 (12%) Query: 6 FGTDGIRG---KSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLEN- 60 FGTDG RG + TF N + R+ A+ YL R VV+G DTR ++ E Sbjct: 3 FGTDGWRGIIAEDFTFE---N-VRRVAQAIADYLKEEGGGGRGVVVGYDTR---FLSEEF 55 Query: 61 -SLVAG-FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPD 117 VA A G+D ++ P+P+PAV+ + L A GVMI+ASHNP + NG+K+ Sbjct: 56 ARAVAEVLAANGIDVYLSDRPVPTPAVSWAVKKLGAAGGVMITASHNPPEYNGVKVKPAF 115 Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL--- 174 G +I IE L + G + +D Y+E ++ + D+ Sbjct: 116 GGSALPEITAAIEARLA-SGEPPGLEARAEGLIETID-PKPDYLEALRSLV--DLEAIRE 171 Query: 175 QGLRIVVDCANGASYKVAPEVFWELGADVVVI---------GDKPNGININLDCGSTNVL 225 GL++VVD GA E+ G DV I G P I NL Sbjct: 172 AGLKVVVDPMYGAGAGYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLG------- 224 Query: 226 SLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVT 285 L V E AD+G+A DGD DR+ VDEKG ++ +QI+AL+ + + LRG +V Sbjct: 225 ELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRG-PVVK 283 Query: 286 TV-MSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDG 344 TV +++ ++R GL + T VG +YI E M +GGE+SG + + + DG Sbjct: 284 TVSTTHL-IDRIAEKHGLPVYETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDG 342 Query: 345 LVAALQVLRYIKQYDKPVSTICH-CFEEY-PQFLRSVSVKDT-----SILNSSSIVQAIA 397 ++A L +L + + KP+S + EEY P + + ++ T +IL ++ Sbjct: 343 ILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDLRLTPAQKEAILEKLKNEPPLS 402 Query: 398 DAESELRGIDR-------------LIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 A ++ ++ L++R SGTE L+RI AE +++ ++D K+ Sbjct: 403 IAGGKVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLRIYAEAPSPEKVEALLDAGKKLA 461 >gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 445 Score = 180 bits (459), Expect = 7e-46 Identities = 130/437 (29%), Positives = 209/437 (47%), Gaps = 24/437 (5%) Query: 7 GTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAGF 66 G GI G+ +TP + R A + K ++V+G+D R SG MLE ++ Sbjct: 6 GIRGIVGEG----LTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGAL 61 Query: 67 TAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIE 126 A G D LG P+P V +L R +A G++I+ASHNP Q NG+K GPDG ++ D Sbjct: 62 LACGCDVIDLGIAPTPTVQVLVRQSQASGGIIITASHNPPQWNGLKFIGPDGEFLTPDEG 121 Query: 127 DRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTL---QGLRIVVDC 183 + + + E YD +G + +I+ V + DV + ++ VD Sbjct: 122 EEVLSCAEAGSAQKAG-YDQLGEVTFSEDAIAEHIDKVLALVDVDVIKIRERNFKVAVDS 180 Query: 184 ANGASYKVAPEVFWELGADVVVIGDKPNGI-NINLDCGSTNVLSLQRKVHEVRADIGIAL 242 NGA + P + +LG +V+V+ +P G+ + N+ L V E AD+G A+ Sbjct: 181 VNGAGGLLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQLCAAVKESGADVGFAV 240 Query: 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGL 302 D D DR+ +VDE G + + +AL + + +G +V + ++ LE G+ Sbjct: 241 DPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGP-VVVNLSTSRALEDIARKHGV 299 Query: 303 SLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPV 362 + R+ VG+ ++E MK +GGE +G +IL D D LV VL+ + KP+ Sbjct: 300 PVFRSAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPL 359 Query: 363 STICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIA----DAE-SELRG--ID----RLIV 411 S I +E PQ+ S + + +++ + DAE S L G +D + V Sbjct: 360 SEIV---DELPQYYISKTKVTIAGEALERLLKKLEAYFKDAEASTLDGLRLDSEDSWVHV 416 Query: 412 RASGTESLIRIMAEGDD 428 R S TE ++RI+AE Sbjct: 417 RPSNTEPIVRIIAEAPT 433 >gnl|CDD|145827 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I. Length = 138 Score = 164 bits (417), Expect = 5e-41 Identities = 58/132 (43%), Positives = 85/132 (64%) Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSL 62 R+ FGT GIRGK +TP F +++G A+ R K +VV+G+DTR S L +L Sbjct: 1 RQLFGTSGIRGKVGVGELTPEFALKLGQAIASYLRAKAGGGKVVVGRDTRYSSRELARAL 60 Query: 63 VAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS 122 AG A G++ +LG +P+PA++ TR L AD G+MI+ASHNP NGIK + DG +S Sbjct: 61 AAGLAANGVEVILLGLLPTPALSFATRKLNADGGIMITASHNPPDYNGIKFYDSDGGPIS 120 Query: 123 TDIEDRIETLLE 134 ++E++IE ++E Sbjct: 121 PEVEEKIEAIIE 132 >gnl|CDD|145829 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III. Length = 111 Score = 133 bits (338), Expect = 8e-32 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 4/114 (3%) Query: 260 NGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMK 319 +GDQI+AL+AR + L+ +V TVMS++ L+R LG L RT+VGD+Y+ E M+ Sbjct: 1 DGDQILALLARYLLE---LKPGAVVKTVMSSLALDRVAEELGGELVRTKVGDKYVKEKMR 57 Query: 320 NNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH-CFEEY 372 G +GGE+SGHII D+ +T DG++AAL VL + + K +S + + Y Sbjct: 58 EEGAVLGGEESGHIIFLDFATTKDGIIAALLVLELLAETGKSLSELLEELPKRY 111 >gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 441 Score = 129 bits (327), Expect = 1e-30 Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 56/468 (11%) Query: 5 FFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64 FG G+ G N ITP F R+G A G V + +D + ML+ +L++ Sbjct: 1 LFGGRGVSGLINV-DITPEFATRLGAAYGSTL---PPGSTVTVSRDASRASRMLKRALIS 56 Query: 65 GFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNG---IKLFGPDGYKV 121 G + G++ LG +P P R L A G+ + S D I+ F G + Sbjct: 57 GLLSTGVNVRDLGALPLPVARYAIRFLGASGGIHVRTS---PDDPDKVEIEFFDSRGLNI 113 Query: 122 STDIEDRIETLL--EDDLTSYLSC-YDSIGHAKRVDGVHDRYIEHVKRTLPRD-VTLQGL 177 S +E +IE ED + D IG + YI + R L + GL Sbjct: 114 SRAMERKIENAFFRED----FRRAHVDEIGDITEPPDFVEYYIRGLLRALDTSGLKKSGL 169 Query: 178 RIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCG----STNVLSLQ----R 229 ++V+D A G + V P + LG DVV++ N LD T R Sbjct: 170 KVVIDYAYGVAGIVLPGLLSRLGCDVVIL-------NARLDEDAPRTDTERQRSLDRLGR 222 Query: 230 KVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMS 289 V + AD G+ +D +G+R+I+VDE G +++ D + AL++ + G +V V + Sbjct: 223 IVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVS--LLVLKSEPGGTVVVPVTA 280 Query: 290 NIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAAL 349 +E+ G + RT+ + +ME N G G I + D + A + Sbjct: 281 PSVIEQLAERYGGRVIRTKTSPQALMEAALENVVLAGDGDGGFIFPEFHP-GFDAIAALV 339 Query: 350 QVLRYIKQYDKPVSTICHCFEEYPQF-LRSVSV------KDTSILNSSSIVQAIADAESE 402 ++L + + + +S I +E P+F + V K + +++ D E Sbjct: 340 KILEMLARTNISLSQI---VDELPRFYVLHKEVPCPWEAKGRVM---RRLIEEAPDKSIE 393 Query: 403 L-RGI------DRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 L G+ ++V E L I AEG D R + + + + + Sbjct: 394 LIDGVKIYEDDGWVLVLPDADEPLCHIYAEGSDQERAEELTEFYVEKV 441 >gnl|CDD|36434 KOG1220, KOG1220, KOG1220, Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]. Length = 607 Score = 123 bits (309), Expect = 1e-28 Identities = 95/385 (24%), Positives = 167/385 (43%), Gaps = 36/385 (9%) Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAVG---YLFRG-KKKHRRVVIGKDTRLSGYML 58 R FGT G+RG+ N + I G YL K+ +VIG D R + Sbjct: 59 RIKFGTAGLRGEMRAGFSRMNELTAIQFGQGLAAYLKNQFPSKNLGIVIGHDGRYNSKRF 118 Query: 59 ENSLVAGFTAAGMDAFILGP-IPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPD 117 + A F G ++ +P+P V +L AD G+MI+ASHNP +DNG K++ + Sbjct: 119 AELVAAVFLLNGFKVYLFSELVPTPFVPFAVLTLGADAGIMITASHNPKEDNGYKVYWSN 178 Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDS---IGHAKRVD---GVHDRYIEHVKRTLPR- 170 G ++ + +++I +E +L LS +D H D + Y E K LP Sbjct: 179 GAQIISPHDEKISDSIEANLEPRLSSWDDSLVKSHPLLHDILAVIIPPYFEVYKELLPCF 238 Query: 171 ---DVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDK---PNGININL---DCGS 221 L GL+ V +G + +LG D ++ + P+ + + + Sbjct: 239 HREANPLSGLKFVYTAGHGVGGFFVKKALEKLGLDTMISVPEQLEPDPMFPTVPFPNPEE 298 Query: 222 TNVLSLQRK-VHEVRADIGIALDGDGDRVIIVDE---KGAIVNGDQIMALIA----REWM 273 L L K + AD+ +A D D DR + ++ + + NG+++ AL++ E Sbjct: 299 KGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHK 358 Query: 274 SHSLLRGNGIVTTVMSNIGLERFIAG-LGLSLKRTEVGDRYI----MEYMKNNGFNV-GG 327 + ++ ++ + +S+ GL RFIA G + T G +++ +E K+ Sbjct: 359 GSTPVQDVSMLNSTVSS-GLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAF 417 Query: 328 EQSGHIILSDYGSTGDGLVAALQVL 352 E+S + + DG+ AA++ Sbjct: 418 EESIGYMFGENHLDKDGVSAAVKFA 442 >gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 487 Score = 122 bits (309), Expect = 2e-28 Identities = 117/477 (24%), Positives = 197/477 (41%), Gaps = 85/477 (17%) Query: 6 FGTDGIRGKS-------NTFPITPNFMMRIGIAVGYLFR--GKKKHRRVVIGKDTRLSGY 56 FGT G+RGK N + + G+A YL + K+R VVIG D+R Sbjct: 4 FGTAGLRGKMGAGTNRMNDYTVR---QATQGLAN-YLKKKGPDAKNRGVVIGYDSRH--- 56 Query: 57 MLENS-----LVAG-FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDN 109 NS L A A G+ ++ P+P ++ R L AD G+MI+ASHNP + N Sbjct: 57 ---NSREFAELTAAVLAANGIKVYLFDDLRPTPLLSFAVRHLGADAGIMITASHNPKEYN 113 Query: 110 GIKLFGPDGYKVSTDIEDRIETLLE---DDLTSYLSCYDSIGHAKRVD-GVHDRYIEHVK 165 G K++ DG ++ + I +E + L G K + + D Y+E VK Sbjct: 114 GYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKYIGEEIDDAYLEAVK 173 Query: 166 RTLPRD--VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGD---KPNGININLDCG 220 + L + L+IV +G K P E G V++ + +P+ Sbjct: 174 KLLVNPELNEGKDLKIVYTPLHGVGGKFVPRALKEAGFTNVIVVEEQAEPDP-------D 226 Query: 221 STNV------------LSLQRKVHEVRADIGIALDGDGDR--VIIVDEKGA--IVNGDQI 264 V L+++ +V AD+ +A D D DR V + D+ G ++ G++I Sbjct: 227 FPTVKFPNPEEPGALDLAIE-LAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEI 285 Query: 265 MALIA----REWMSHSLLRGNGIV--TTVMSNIGLERFIAGLGLSLKRTEVGDRYI---M 315 AL+A + L N ++ T V S + L + G+ ++ T G ++I + Sbjct: 286 GALLADYLLEQRKEKGKLPKNPVIVKTIVSSEL-LRKIAKKYGVKVEETLTGFKWIGNKI 344 Query: 316 EYMKNNGFNV--GGEQS-GHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH----C 368 E +++ G G E+S G+++ + DG+ AA + T+ Sbjct: 345 EELESGGKKFLFGFEESIGYLV-GPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDEL 403 Query: 369 FEEYPQFL-RSVSVKDTSILNSSSIVQAIADAESE-------LRGIDRLIVRASGTE 417 +E+Y + +++S+ I + + L R+ VR SGTE Sbjct: 404 YEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTVRPSGTE 460 >gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 459 Score = 111 bits (280), Expect = 4e-25 Identities = 111/473 (23%), Positives = 179/473 (37%), Gaps = 61/473 (12%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 FGT G+RG T A K V +G+D R S + + A Sbjct: 2 FGTSGLRGLVTDL--TDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAA 59 Query: 66 FTAAGMDAFILGPIPSPAVAMLTRSLRADVG-VMISASHNPYQDNGIKLFGPDGYKVSTD 124 AG G +P+PA+A+ +++ +M++ SH P NG+K + PDG +++ Sbjct: 60 LRDAGFRVVDCGAVPTPALAL--YAMKRGAPAIMVTGSHIPADRNGLKFYRPDG-EITKA 116 Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184 E I L + + + D YI L+GLRI V Sbjct: 117 DEAAILAALVELPEALFD--PAGALLPPDTDAADAYIARYTDFFGAG-ALKGLRIGVYQH 173 Query: 185 NGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRK-VHEVRADIGIALD 243 + + + LGA+VV +G I ++ + +L E D ++ D Sbjct: 174 SSVGRDLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTD 233 Query: 244 GDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLS 303 GDGDR ++ DE G + GD I+ L+ + L + +VT V SN +E +G Sbjct: 234 GDGDRPLVADETGEWLRGD-ILGLLTARF-----LGADTVVTPVSSNSAIEL--SGFFKR 285 Query: 304 LKRTEVGDRYI---MEYMKNNGFN--VGGEQSGHIIL-SDYGS---------TGDGLVAA 348 + RT +G Y+ M G VG E +G +L SD T D ++ Sbjct: 286 VVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPI 345 Query: 349 LQVLRYIKQYDKPVSTICHCFEEYPQ-FLRSVSVKD------TSIL-----NSSSIVQAI 396 L VL K+ P+S + P F S +++ +++ + + Sbjct: 346 LAVLAAAKEAGIPLSELVA---SLPARFTASDRLQNFPTEKSQALIARLSADPEARAAFF 402 Query: 397 ADAESELRGIDRL-----------IV--RASGTESLIRIMAEGDDLSRIKRIV 436 E+ ID IV R SG +R E D R + ++ Sbjct: 403 FALGGEVASIDTTDGLRMTFANGDIVHLRPSGNAPELRCYVEADSEERARELL 455 >gnl|CDD|30382 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and metabolism]. Length = 524 Score = 103 bits (258), Expect = 1e-22 Identities = 90/355 (25%), Positives = 146/355 (41%), Gaps = 33/355 (9%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 FGT G RG + F N ++ A+ +V+G DT S + Sbjct: 18 FGTSGHRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEV 77 Query: 66 FTAAGMDAFILGP---IPSPAV--AMLTRSLR----ADVGVMISASHNPYQDNGIKLFGP 116 A G++ + G P+PA A+LT + + AD G++++ SHNP +D GIK P Sbjct: 78 LAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALAD-GIVLTPSHNPPEDGGIKYNPP 136 Query: 117 DGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDG----VHD---RYIEHVKRTLP 169 +G + D IE D L IG + + D Y+E ++ Sbjct: 137 NGGPAPEKVTDAIEARANDLYKIGLLDVKRIGLDQAYGSLTVKIIDPVKDYVELLEEIFD 196 Query: 170 RDVTLQ-GLRIVVDCANGASYKVAPEVF-WELGADVVVI----------GDKPNGININL 217 D + GLR+ D G + + L V G P+G NI + Sbjct: 197 FDAIRKAGLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQNVDPTPDFMGLDPDG-NIRM 255 Query: 218 DCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSL 277 DC S ++ ++ + + D A DGDGDR IV ++N + +A+ H Sbjct: 256 DCSSPCAMAGLLRLRD-KYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRP 314 Query: 278 LRGN--GIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQS 330 G + T++S+ ++R +A LG L VG ++ ++ + F GGE+S Sbjct: 315 YWGGIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEES 369 >gnl|CDD|145828 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II. Length = 103 Score = 90.1 bits (224), Expect = 1e-18 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 158 DRYIEHVKRTLPRD-VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ 216 D YI+ + + + +GL++V D +G ++ PE+ LGA+VV +P+G Sbjct: 1 DAYIDRLASAFDLEALKKRGLKVVYDPLHGVGGEILPELLKRLGAEVVEENCEPDGDFPT 60 Query: 217 LDC---GSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKG 256 + L V EV AD+GIA DGD DR+ +VDEKG Sbjct: 61 KAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGVVDEKG 103 >gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 522 Score = 71.1 bits (175), Expect = 6e-13 Identities = 102/420 (24%), Positives = 156/420 (37%), Gaps = 113/420 (26%) Query: 3 RRFFGTDGIRGKSNTFPITPNFMMRIGIAV----------GYLFRGKKKHRRVVIGKDTR 52 R FGT G RG S ++ I A+ G LF +GKDT Sbjct: 20 RVAFGTSGHRGSSLKGSFNEAHILAISQAICDYRKSQGITGPLF----------LGKDTH 69 Query: 53 -LSGYMLENSLVAGFTAAGMDAFI---LGPIPSPAV--AMLT-----RSLRADVGVMISA 101 LS S + A G++ I G P+P + A+LT AD G++I+ Sbjct: 70 ALSEPAF-ISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGLAD-GIVITP 127 Query: 102 SHNPYQDNGIKLFGPDG----YKVSTDIEDRIETLLEDDLT-----SYLSCYDSIGHAKR 152 SHNP +D G K P G ++ IE R LL + L + S G+ R Sbjct: 128 SHNPPEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRIPLEAALAS-GYTHR 186 Query: 153 VDGVHDRYIEHVKRTLPRDVTLQ-----GLRIVVDCANGASYKVAPEVFWELGADVVVIG 207 D ++ L + + GLR+ VD GAS W+ I Sbjct: 187 HD-----FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASVPY-----WQP------IA 230 Query: 208 DKPNGININL----------------------DCGS----TNVLSLQRKVHEVRADIGIA 241 +K G+N+ + DC S +L L+ K D+ A Sbjct: 231 EKY-GLNLTVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGLLKLKDKF-----DLAFA 284 Query: 242 LDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR-------GNGIVTTVMSNIGLE 294 D D DR IV ++N + +++ L G+ T++S+ ++ Sbjct: 285 NDPDADRHGIVTPSAGLMNPNHYLSV-----AIDYLFTHRPLWNKSAGVGKTLVSSSMID 339 Query: 295 RFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQS-GHIILSDYGST----GDGLVAAL 349 R A LG L VG ++ ++ + + GGE+S G L G+ DG++ L Sbjct: 340 RVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399 >gnl|CDD|35844 KOG0625, KOG0625, KOG0625, Phosphoglucomutase [Carbohydrate transport and metabolism]. Length = 558 Score = 68.0 bits (166), Expect = 5e-12 Identities = 96/383 (25%), Positives = 153/383 (39%), Gaps = 49/383 (12%) Query: 7 GTDGIRGKSNTFP---ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63 GT G+R K F T NF+ I A+ K K +V+G D R + Sbjct: 19 GTSGLRKKVKVFKQPNYTENFVQAIMNALP---GEKSKGATLVVGGDGRYYNKEAIQIIA 75 Query: 64 AGFTAAGMDAFILGP---IPSPAVAMLTRS-LRADVGVMISASHN---PYQDNGIKLFGP 116 A G+ I+G + +PAV+ + R ++A G++++ASHN P D GIK Sbjct: 76 KIAAANGVGRLIVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLE 135 Query: 117 DGYKVSTDIEDRIETLLEDDLTSYLSCYD------SIGHAKR--------VDGVHDRYIE 162 +G + D+I + + ++ Y D ++G +D V D Y+ Sbjct: 136 NGGPAPESVTDKIYEITKT-ISEYKIAKDPKIDLSTVGKTSFDGPFTVEVIDPVKD-YVN 193 Query: 163 HVKRTLPRDV------TLQGLRIVVDCANGASYKVAPEVFW-ELGADVVVIGD---KPNG 212 +K D+ + L+ D +G + +F ELGA + + + Sbjct: 194 LMKEIFDFDLIKSLLSGPKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPLEDF 253 Query: 213 ININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREW 272 + D T L +V D G A DGDGDR +I+ + G V +A+IA Sbjct: 254 GGGHPDPNLTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANA 313 Query: 273 MSHSLLRGNGI--VTTVMSNIG-LERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQ 329 + R G+ M G L+R LGL + G ++ M ++ GE+ Sbjct: 314 EAIPYFRKQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEE 373 Query: 330 S---GHIILSDYGSTGDGLVAAL 349 S G SD+ DG+ A L Sbjct: 374 SFGTG----SDHIREKDGIWAVL 392 >gnl|CDD|144122 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase, C-terminal domain. Length = 71 Score = 55.4 bits (134), Expect = 3e-08 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%) Query: 386 ILNSSSIVQAIADAESELRGID--RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 + ++++A A+A L D RL+VR SGTE ++R+ E DD + ++ I ++A+++ Sbjct: 12 VAALEALLKAFAEALKIL-FEDGRRLVVRPSGTEPVLRVYVEADDEAELEEIAAEVAELL 70 >gnl|CDD|37748 KOG2537, KOG2537, KOG2537, Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]. Length = 539 Score = 55.3 bits (133), Expect = 3e-08 Identities = 91/467 (19%), Positives = 162/467 (34%), Gaps = 112/467 (23%) Query: 38 GKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGV 97 G VV+G+DTR S L N++ G A G + +P + + R+ Sbjct: 120 GTTVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDYGVVTTPQLHYMVRAS------ 173 Query: 98 MISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVH 157 N G +GY Y + A Sbjct: 174 ------NTKGAYGKGKPTEEGY------------------------YSKLSKAFNE---- 199 Query: 158 DRYIEHVKRTLPRDVTLQGLRIVVDCANG-ASYKVAPEVFWELGA-DVVVIGDKPNGINI 215 R + ++ + +++VDCANG + K+ + + G +V V+ D + + Sbjct: 200 -------LRNITQESGDEVSKLIVDCANGVGAPKLKELLGIDSGLLNVEVVNDGIDPGLL 252 Query: 216 NLDCGSTNVLSLQR--------KVHEVRADIGIALDGDGDRVII--VDEKGA--IVNGDQ 263 N CG+ V + Q+ K + A + DGD DR++ +D+ +++GD+ Sbjct: 253 NNGCGADFVKTKQKPPKGLSPIKANTRCA----SFDGDADRLVYFYIDDDSEFHLLDGDK 308 Query: 264 IMALIA---REWMSHSLLRGN-GIVTTVMSNIGLERFIA-GLGLSLKRTEVGDRYIMEYM 318 I LIA RE + L G+V T +N ++ L + G +++ Sbjct: 309 IATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVPTGVKHLHHAA 368 Query: 319 KNNGFNVGGEQSGH--IILSDYG-------------------------------STGDGL 345 + E +GH I+ S+ + GD + Sbjct: 369 AEFDIGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAI 428 Query: 346 VAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSI---------VQAI 396 L V + V + + P V V D SI+ ++ +Q Sbjct: 429 SDMLAVEAILAHKGWSVQDWDELYRDLPNRQLKVKVPDRSIIKTTDAERQLVKPVGLQDK 488 Query: 397 ADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 DA R VR SGTE ++R+ AE ++ ++A+++ Sbjct: 489 IDALVAKYKRGRSFVRPSGTEDVVRVYAEASTKEDADQLALEVAQLV 535 Score = 48.0 bits (114), Expect = 5e-06 Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 95 VGVMISASHNPYQDNGIKLFGPDGYKVSTDIED 127 +GVMI+ASHNP +DNG+K+ P G ++ E+ Sbjct: 61 IGVMITASHNPVEDNGVKIVDPSGEMLAASWEE 93 >gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 513 Score = 54.5 bits (132), Expect = 6e-08 Identities = 16/24 (66%), Positives = 21/24 (87%) Query: 95 VGVMISASHNPYQDNGIKLFGPDG 118 +GVMI+ASHNP +DNG+K+ PDG Sbjct: 37 IGVMITASHNPVEDNGVKIVDPDG 60 Score = 51.8 bits (125), Expect = 3e-07 Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 72/267 (26%) Query: 44 RVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASH 103 V +G+DTR SG L +L+ G A G + G + +P + L R+ Sbjct: 104 NVFVGRDTRPSGPALLQALLDGLKALGGNVIDYGLVTTPQLHYLVRAA------------ 151 Query: 104 NPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEH 163 N +G E Y Y+ + A + E Sbjct: 152 -----NTEGAYG------------------EPTEEGY---YEKLSKA---------FNEL 176 Query: 164 VKRTLPRDVTLQGLRIVVDCANG-ASYKVAP-EVFWELGADVVVIGD-KPNGININLDCG 220 L +D + ++VVDCANG + K+ + G V +I D + +N CG Sbjct: 177 YN--LLQDGGDEPEKLVVDCANGVGALKLKELLKRLKKGLSVKIINDGEEGPELLNDGCG 234 Query: 221 STNVLSLQR-------KVHEVRADIGIALDGDGDRVI--IVDEKGA--IVNGDQIMALIA 269 + V + Q+ K VR + DGD DR++ D +++GD+I L A Sbjct: 235 ADYVKTKQKPPRGFELKPPGVRC---CSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFA 291 Query: 270 ---REWMSHSLLRGN---GIVTTVMSN 290 +E + + G+V T +N Sbjct: 292 KFIKELLKKAGEELKLTIGVVQTAYAN 318 Score = 37.6 bits (88), Expect = 0.008 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 23/93 (24%) Query: 367 HCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESEL---RG----IDRLI--------- 410 + + + P V V D S++ ++ DAE L +G ID ++ Sbjct: 428 NLYTDLPNRQLKVKVPDRSVIKTT-------DAERRLVEPKGLQDKIDAIVAKYNNGRAF 480 Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 VR SGTE ++R+ AE + +++A+++ Sbjct: 481 VRPSGTEDVVRVYAEAATQEEADELANEVAELV 513 >gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.. Length = 548 Score = 48.0 bits (115), Expect = 6e-06 Identities = 82/305 (26%), Positives = 130/305 (42%), Gaps = 57/305 (18%) Query: 7 GTDGIRGKSNTFP---ITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLE--NS 61 GT G+R K F NF+ I A+ K K +V+G D R Y E Sbjct: 14 GTSGLRKKVKVFQQPNYLENFVQSIFNALP---PEKLKGATLVVGGDGRY--YNKEAIQI 68 Query: 62 LVAGFTAAGMDAFILGP---IPSPAVAMLTRSLRADVGVMISASHNP---YQDNGIKLF- 114 ++ A G+ ++G + +PAV+ + R +A G++++ASHNP D GIK + Sbjct: 69 IIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIK-YN 127 Query: 115 ------GPDG-----YKVSTDIED-RIETLLEDDLTSYLSCYDSIGHAKR---------V 153 P+ Y+++ I + +I + DL IG K + Sbjct: 128 TSNGGPAPESVTDKIYEITKKITEYKIADDPDVDL-------SKIGVTKFGGKPFTVEVI 180 Query: 154 DGVHDRYIEHVKR-----TLPRDVTLQGLRIVVDCANGASYKVAPEVFW-ELGA--DVVV 205 D V D Y+E +K + + ++ +G ++ D +G + A ++F ELGA VV Sbjct: 181 DSVED-YVELMKEIFDFDAIKKLLSRKGFKVRFDAMHGVTGPYAKKIFVEELGAPESSVV 239 Query: 206 IGD-KPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQI 264 P+ + D T L + D G A DGDGDR +I+ KG V Sbjct: 240 NCTPLPDFGGGHPDPNLTYAKDLVELMKSGEPDFGAASDGDGDRNMILG-KGFFVTPSDS 298 Query: 265 MALIA 269 +A+IA Sbjct: 299 VAVIA 303 >gnl|CDD|37077 KOG1866, KOG1866, KOG1866, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]. Length = 944 Score = 30.7 bits (69), Expect = 0.82 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%) Query: 25 MMRIGIAVGYLFRG---KKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFILGPIPS 81 ++ I +A +LF KKH R L L F + S Sbjct: 511 LISIQLASQFLFTTGFRTKKHLR----GPASEWYDALCRLLRHSKNVRKW--FAHNVLFS 564 Query: 82 PAVAMLTRSLRA----DVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDL 137 + + L V +++ +H D L D +S + + + LL+ D+ Sbjct: 565 VSSELSEYLLECPSVRFVKLIVFIAHFSLLDGP--LPSYDNLSLSDQLLEAVLNLLDRDV 622 Query: 138 TSY 140 + + Sbjct: 623 SEH 625 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 28.6 bits (64), Expect = 3.7 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE 162 + + EDR+ LL++ + +S +GH + HDR ++ Sbjct: 122 LDEESEDRLYQLLKELGITVIS----VGHRPSLWKFHDRVLD 159 >gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6 proteins. Length = 566 Score = 28.1 bits (63), Expect = 4.6 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Query: 359 DKPVSTICH--CFEEYPQFLRSVSVKDTSILNSSSIVQAI 396 D + I H C E+ F+R + K++SIL SI++ I Sbjct: 479 DIILKIISHLKCVEDVTTFVRFATCKNSSIL--PSIIRTI 516 >gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316 Score = 28.0 bits (63), Expect = 5.6 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 8/32 (25%) Query: 315 MEYMKNNGF--------NVGGEQSGHIILSDY 338 +EY+ G N+ +SGHI+LSD+ Sbjct: 116 LEYLHLLGIVYRDLKPENILLHESGHIMLSDF 147 >gnl|CDD|36524 KOG1310, KOG1310, KOG1310, WD40 repeat protein [General function prediction only]. Length = 758 Score = 27.8 bits (61), Expect = 6.4 Identities = 11/57 (19%), Positives = 17/57 (29%) Query: 380 SVKDTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIV 436 SVK N+ ++ D +L +D R+KRI Sbjct: 98 SVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA 154 >gnl|CDD|147016 pfam04654, DUF599, Protein of unknown function, DUF599. This family includes several uncharacterized proteins. Length = 216 Score = 27.5 bits (62), Expect = 7.5 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%) Query: 263 QIMALIAREWMSHSLLRGNGIV-TTVMSN 290 IMA R WM L R ++ ++ N Sbjct: 30 GIMARYRRAWMRRMLTREVRVLDVQILRN 58 >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional. Length = 742 Score = 27.5 bits (61), Expect = 7.7 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 383 DTSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKV 442 D + L I++A D + +G I+ +GT + I+ G ++I+ +++ L Sbjct: 417 DPTQLAQGIILEAHLD---KTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNK 473 Query: 443 I 443 I Sbjct: 474 I 474 >gnl|CDD|30427 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism]. Length = 310 Score = 27.4 bits (61), Expect = 8.5 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 60 NSLVAGFTAAGMDAFILGPI---PSPAVAMLTRSLRADVGVMISASHNPYQ 107 NSL+ GMD I P P P V + + G I+ + +P + Sbjct: 167 NSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEE 217 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 27.2 bits (60), Expect = 9.4 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Query: 121 VSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKR 166 + + EDR+ LL+++L + S+GH + H R +E + Sbjct: 546 LDEETEDRLYQLLKEELPD--ATVISVGHRPTLWNFHSRQLELLDD 589 >gnl|CDD|144473 pfam00888, Cullin, Cullin family. Length = 605 Score = 27.2 bits (60), Expect = 9.7 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 351 VLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGIDRLI 410 V ++ +DK S + F FL ++ +NS + AE + D L+ Sbjct: 304 VQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINS----NSSKSAELLAKYCDSLL 359 Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDD 438 + S + + + D + + + ++D Sbjct: 360 KKGSKGLNEEELEEKLDKIIVLFKYIED 387 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.140 0.403 Gapped Lambda K H 0.267 0.0707 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,376,187 Number of extensions: 298996 Number of successful extensions: 932 Number of sequences better than 10.0: 1 Number of HSP's gapped: 866 Number of HSP's successfully gapped: 44 Length of query: 448 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 351 Effective length of database: 4,167,664 Effective search space: 1462850064 Effective search space used: 1462850064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.5 bits)