RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter asiaticus str. psy62] (448 letters) >1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme-ligand complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X* Length = 463 Score = 337 bits (864), Expect = 4e-93 Identities = 117/461 (25%), Positives = 196/461 (42%), Gaps = 35/461 (7%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 F IRG +T IG A+G + V +G+D RLSG L L+ G Sbjct: 14 FRAYDIRGVVGD-TLTAETAYWIGRAIGSESL-ARGEPCVAVGRDGRLSGPELVKQLIQG 71 Query: 66 FTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDI 125 G +G +P+P + L GVM++ SHNP NG K+ + I Sbjct: 72 LVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGETLANEQI 131 Query: 126 EDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCAN 185 + E + ++DL S + + + RY + ++ + + +++VVDC N Sbjct: 132 QALRERIEKNDLASGVGSVEQVDI-------LPRYFKQIRDDIAM---AKPMKVVVDCGN 181 Query: 186 GASYKVAPEVFWELGADVVVIGDKPNGININLDCGST---NVLSLQRKVHEVRADIGIAL 242 G + +AP++ LG V+ + + +G N N+ L KV AD+G+A Sbjct: 182 GVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAF 241 Query: 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGL 302 DGDGDRV +V G I+ D+++ L A++ +S G I+ V L I+G G Sbjct: 242 DGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSR--NPGADIIFDVKCTRRLIALISGYGG 299 Query: 303 SLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGD-GLVAALQVLRYIKQYDKP 361 + G I + MK G + GE SGH+ + D G+ +A ++L + Q + Sbjct: 300 RPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRD 359 Query: 362 VSTICHCFEEYPQFLRS----VSVKDTSILNSSSIVQAIAD-AESELRGID--------- 407 + F +P + + ++V + S +Q A E + +D Sbjct: 360 SEHV---FSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKG 416 Query: 408 RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMIDS 448 +VRAS T ++ + E D ++RI + +DS Sbjct: 417 WGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDS 457 >3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magnesium, metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp} Length = 443 Score = 323 bits (828), Expect = 5e-89 Identities = 165/441 (37%), Positives = 252/441 (57%), Gaps = 6/441 (1%) Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63 ++FGTDGIRG+ IT F ++G AVG L K + V++G+DTR SG L+ +LV Sbjct: 3 KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALV 62 Query: 64 AGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVST 123 +G AAG+D LG +P+P VA +T RA G +I+ASHN + DNGIKLF +G+K+ Sbjct: 63 SGLNAAGIDVLDLGVVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDD 122 Query: 124 DIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDC 183 +E+ +E +++ D G K + D YIE + + V ++VVDC Sbjct: 123 ALEEEVEDMIDGD--FIYQPQFKFGSYKILANAIDEYIESIYSRFAKFVNY-KGKVVVDC 179 Query: 184 ANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALD 243 A+GA+ + + G + V I P+G+NIN+ CG+T V ++++ V E +AD+GI+LD Sbjct: 180 AHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGISLD 239 Query: 244 GDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLS 303 GD DR+IIVDE G ++GD I+ ++A+ NGIV T M+N+ E + Sbjct: 240 GDADRIIIVDENGQEIDGDGILNILAQYSDICG--GTNGIVGTQMTNMSYENHYRANKIP 297 Query: 304 LKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVS 363 R++VGDRY++E + G+ +GGE SGH+I ++G+TGDGL A+Q+L Q DKPVS Sbjct: 298 FIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVS 357 Query: 364 TICHCFEEYPQFLRSVSVKD-TSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRI 422 E Q L +V + + + + + D E L R+++R SGTE ++R+ Sbjct: 358 EFKLQGELMQQTLINVPLTKKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRV 417 Query: 423 MAEGDDLSRIKRIVDDLAKVI 443 M E DD S + L + + Sbjct: 418 MVEADDKSLATNEAEYLVEKV 438 >1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal complex, isomerase; 2.00A {Pyrococcus horikoshii} Length = 455 Score = 244 bits (623), Expect = 3e-65 Identities = 136/453 (30%), Positives = 223/453 (49%), Gaps = 18/453 (3%) Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLENSL 62 + FGT G+RG +N ITP F M+IG+A G L R +K VV+G+DTR+SG ML+ +L Sbjct: 3 KLFGTFGVRGIANE-KITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEAL 61 Query: 63 VAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS 122 ++G + G D +G P+PAV T+ AD G +I+ASHNP + NGIKL P+G + Sbjct: 62 ISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGMGLK 121 Query: 123 TDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLP-RDVTLQGLRIVV 181 + E +E L + + + IG +R D + YIE +K + + + +VV Sbjct: 122 KEREAIVEELFFKEDFD-RAKWYEIGEVRRED-IIKPYIEAIKSKVDVEAIKKRKPFVVV 179 Query: 182 DCANGASYKVAPEVFWELGADVVVIGDKPNGININLDC--GSTNVLSLQRKVHEVRADIG 239 D +NGA P + ELG V+ + +P+G + N+ V + AD G Sbjct: 180 DTSNGAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEPNEENLKEFMEIVKALGADFG 239 Query: 240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAG 299 +A DGD DR + +DE G + GD+ AL+A + G +VTTV ++ L+ Sbjct: 240 VAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKEK--GGGLLVTTVATSNLLDDIAKK 297 Query: 300 LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYD 359 G + RT+VGD + + N +GGE++G +I ++ DG + +V+ + Sbjct: 298 HGAKVMRTKVGDLIVARALYENNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAKSG 357 Query: 360 KPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGID---------RLI 410 K S + +Y Q V+ + + + + + D ++ Sbjct: 358 KKFSELIDELPKYYQIKTKRHVEGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVL 417 Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 VRASGTE +IRI +E + + ++ +++ Sbjct: 418 VRASGTEPIIRIFSEAKSKEKAQEYLNLGIELL 450 >1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A Length = 572 Score = 229 bits (583), Expect = 1e-60 Identities = 101/533 (18%), Positives = 176/533 (33%), Gaps = 98/533 (18%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHR-RVVIGKDTRLSGYMLENSLV 63 GT G+R K + PN++ ++ L + + K + + +G D R S++ Sbjct: 21 PGTSGLRKKVSEA-TQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSII 79 Query: 64 AGFTAAGMDAFIL---GPIPSPAVAMLTRSLRADV-----GVMISASHNP----YQDNGI 111 A + + G + +PA + R + +V G++++ASHNP + D GI Sbjct: 80 RLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFGI 139 Query: 112 KLFGPDGYKVSTDIEDRIETLLE------------------DDLTSYLSCYDSIGHAKRV 153 K G D D+I T D + Y + + Sbjct: 140 KFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFE 199 Query: 154 DGVHD---RYIEHVKRTLPRDV-----TLQGLRIVVDCANGASYKVAPEVFWELGADVVV 205 V D Y + +++ D+ + + D +G + A +F L Sbjct: 200 VKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKE 259 Query: 206 I----GDKPNGININLDCGSTNVLSLQ-------RKVHEVRADIGIALDGDGDRVIIVDE 254 + + D T L +K G A DGD DR +I+ Sbjct: 260 SLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGR 319 Query: 255 KGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYI 314 + + D + + A + + S L++ A G+ L T G ++ Sbjct: 320 QFFVTPSDSLAVIAANANLIFKNGLLGAARSMPTSG-ALDKVAAKNGIKLFETPTGWKFF 378 Query: 315 MEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE--- 371 M N+ GE+S S++ DG+ A L L + +K E Sbjct: 379 GNLMDAGLINLCGEESFGTG-SNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQ 437 Query: 372 -YPQFLRSVSVKDTSILNSSSIVQAI-------------------ADAESELRGID---- 407 + QF R+ + S+ + AD + +D Sbjct: 438 YWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVS 497 Query: 408 -------------RLIVRASGTESL---IRIMAEGDDLSRIKRIVDD-LAKVI 443 R+I R SGT S+ IRI E + +I+ LA +I Sbjct: 498 KNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHETATALANII 550 >2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} Length = 455 Score = 222 bits (564), Expect = 2e-58 Identities = 112/454 (24%), Positives = 206/454 (45%), Gaps = 18/454 (3%) Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63 + FGTDG+RG N +TP ++++ A+G F K+ ++++G+D R G ML + Sbjct: 3 KLFGTDGVRGIVNK-ELTPELVLKLSKAIGTFF---GKNSKILVGRDVRAGGDMLVKIVE 58 Query: 64 AGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVST 123 G + G++ + G P+PA+ ++L D GV+I+ASHNP NGIK+ DG ++ Sbjct: 59 GGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRR 118 Query: 124 DIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLP-RDVTLQGLRIVVD 182 + E+ IE L + + + KR D V Y+ + + + + ++++D Sbjct: 119 EKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGILSHVDIEKIKKKNYKVLID 178 Query: 183 CANGASYKVAPEVFWELGADVVVIGDKPN--GININLDCGSTNVLSLQRKVHEVRADIGI 240 AN P V LG + I + + ++ V ++ D+G+ Sbjct: 179 PANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGV 238 Query: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300 A DGD DR I +D +G + GD+ L++ + IVT V S+ +E +++ Sbjct: 239 AHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKY 298 Query: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360 + + T+VG I + + G E++G + + DG ++ +L + + Sbjct: 299 NIQVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENV 358 Query: 361 PVSTICHCFEEYPQFLRSVSVKD-----------TSILNSSSIVQAIADAESELRGIDRL 409 + + +Y V +K + ++SS+ D + Sbjct: 359 SSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSSVKAITIDGVKIIGKDFWF 418 Query: 410 IVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 +VR SGTE +IRIMAE D + +V++L K++ Sbjct: 419 LVRKSGTEPIIRIMAEAKDENVANNLVNELKKIV 452 >3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A* Length = 561 Score = 215 bits (548), Expect = 1e-56 Identities = 98/532 (18%), Positives = 181/532 (34%), Gaps = 92/532 (17%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64 GT G+R + F + N+ ++ + +++ +V+G D R +V Sbjct: 16 PGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVR 75 Query: 65 GFTAAGMDAFIL---GPIPSPAVAMLTRSLRADVGVMISASHNPYQDN---GIKLFGPDG 118 A G+ ++ G + +PAV+ + R ++A G++++ASHNP N GIK +G Sbjct: 76 IAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNG 135 Query: 119 YKVSTDIEDRIETLLEDDLTSYLSCYDSI-----------------GHAKRVDGVHDRYI 161 I D+I + + + + + + Y Sbjct: 136 GPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYA 195 Query: 162 EHVKRTLPRDV------TLQGLRIVVDCANGASYKVAPEVFWELGA----DVVVIGDKPN 211 ++ + L+I +D +G ++ E V + Sbjct: 196 TMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLED 255 Query: 212 GININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIARE 271 + D T L + D G A DGDGDR +I+ + G VN +A+IA Sbjct: 256 FGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN 315 Query: 272 WMSHSLLRGNG---IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGE 328 S + G ++ ++ L+R ++L T G ++ M + ++ GE Sbjct: 316 IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGE 375 Query: 329 QSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILN 388 +S SD+ DGL A L L + + V I + + +F R+ + Sbjct: 376 ESFGTG-SDHIREKDGLWAVLAWLSILATRKQSVEDILK--DHWHKFGRNFFTRYDYEEV 432 Query: 389 SSSIVQAIADAESELR---------------------------------------GI--- 406 + + L G+ Sbjct: 433 EAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLI 492 Query: 407 ----DRLIVRASGTES---LIRIMAE--GDDLSRIKRIVDD-LAKVIPMIDS 448 R+I R SGT S IR+ + D ++I + LA +I + Sbjct: 493 FADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALK 544 >2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium LT2} Length = 549 Score = 209 bits (532), Expect = 9e-55 Identities = 96/498 (19%), Positives = 161/498 (32%), Gaps = 61/498 (12%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 FGT G RG + ++ I A+ +GKDT S++ Sbjct: 45 FGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEV 104 Query: 66 FTAAGMDAFIL---GPIPSPAVAMLTRS-----LRADVGVMISASHNPYQDNGIKLFGPD 117 A G+D + G P+PAV+ G++I+ SHNP +D GIK P+ Sbjct: 105 LAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPN 164 Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDSI--------GHAKRVDGVHDRYIEHVKRTLP 169 G T++ +E L L I GH K VD V Sbjct: 165 GGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDM 224 Query: 170 RDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVV----------IGDKPNGININLDC 219 + GL + VD G+ + + ++ + I +DC Sbjct: 225 AAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDC 284 Query: 220 GSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR 279 S ++ + + D+ A D D DR IV G + + I + L Sbjct: 285 SSECAMAGLLALRDKF-DLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWG 343 Query: 280 GNGI-VTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD- 337 + T++S+ ++R + LG L VG ++ ++ + + F GGE+S Sbjct: 344 KDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRF 403 Query: 338 ----YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE------YPQFLRSVSVKDTSIL 387 + + DG++ L K + Y + S + + L Sbjct: 404 DGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAAL 463 Query: 388 NS-------------SSIVQAIADAESELRGID---------RLIVRASGTESLIRIMAE 425 + I + A I R SGTE +I E Sbjct: 464 SKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCE 523 Query: 426 GDDLSRIKRIVDDLAKVI 443 ++ ++ A I Sbjct: 524 SFLGEEHRKQIEKEAVEI 541 >2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics, NPPSFA; 2.52A {Thermus thermophilus HB8} Length = 524 Score = 200 bits (508), Expect = 6e-52 Identities = 101/496 (20%), Positives = 179/496 (36%), Gaps = 60/496 (12%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 FGT G RG S T ++ I A+ L + + KDT + ++ Sbjct: 26 FGTSGHRGSSLKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSV 85 Query: 66 FTAAGMDAFIL---GPIPSPAVAMLTRSLRADV-----GVMISASHNPYQDNGIKLFGPD 117 F A G++ + P+P V++ A GV+++ SHNP +D G K P Sbjct: 86 FAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNPPEDGGFKYNPPT 145 Query: 118 GYKVSTDIED----RIETLLEDDLTS--YLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD 171 G + I R LL++ L L +++ AK D + + Sbjct: 146 GGPANARITRAIEERANALLQEGLKGVKRLPLREALARAKPFDYAGLYVEKVAEAVDLEA 205 Query: 172 VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG----------ININLDCGS 221 + GLRI VD GAS +V + G + V+ + I +DC S Sbjct: 206 IRASGLRIGVDPLGGASLRVWERLAESHGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSS 265 Query: 222 TNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN 281 + R D+ I D D DR IV +G + + A + + + S G Sbjct: 266 PYA-MAGLLALKDRFDLAIGNDPDADRHGIVTPRGLMNPNHYLAAALHHLYTTRS-WPGA 323 Query: 282 GIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHII-----LS 336 + T +++ L+R LG + T VG ++ + + GE+S Sbjct: 324 KVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGR 383 Query: 337 DYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE------YPQFLRSVSVKD------- 383 + + DG++ L + + + + E Y + VS + Sbjct: 384 PFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEKLGRPYYARKDLPVSPEAKARLARL 443 Query: 384 ------TSILNSSSIVQAIADAESELRGID---------RLIVRASGTESLIRIMAEG-D 427 S L ++Q + A + VR SGTE + ++ AE Sbjct: 444 SAKEVHPSTLAGEPVLQVLDRATGNGEPLGGIKVVAANAWFAVRPSGTEDVAKVYAESFL 503 Query: 428 DLSRIKRIVDDLAKVI 443 + ++R++++ ++ Sbjct: 504 GEAHLERVLEEATALL 519 >1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus} Length = 464 Score = 194 bits (492), Expect = 4e-50 Identities = 97/459 (21%), Positives = 181/459 (39%), Gaps = 31/459 (6%) Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65 FGT+G RG T + R+ A G ++ VV+G DTR +L Sbjct: 14 FGTEGFRGVIARE-FTFATLHRLAEAYGRHLL-ERGGGLVVVGHDTRFLADAFARALSGH 71 Query: 66 FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124 G+ +L GP+P+P ++ R L+A G M++ASHNP Q G+K G ++ + Sbjct: 72 LAGMGLKVVLLKGPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQE 131 Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184 IE L+ ++ + G + +D + + ++ + D Sbjct: 132 EAKAIEALVPEEARAL------EGAYETLDLREAYFEALKAHLDLKALSGFSGVLYHDSM 185 Query: 185 NGASYKVAPEVFWELGADV--VVIGDKPNGININLDCG---STNVLSLQRKVHEVRADIG 239 GA +G ++ I ++P+ + ++ ++L E Sbjct: 186 GGAGAGFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFA 245 Query: 240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAG 299 +A DGD DRV +V G N Q++ +A V L+R Sbjct: 246 VATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRKG--HRGRAVKNFAVTWLLDRLGER 303 Query: 300 LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYD 359 LG + T VG ++I E +GGE+SG + ++ DG++ +L +L + Sbjct: 304 LGFGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATG 363 Query: 360 KPVSTICHCFEEYPQFLRS---VSVKDTSILNSSSIVQAIADAESELRGID--------- 407 K ++ E + + + + L+ + + A +G+D Sbjct: 364 KDLAEQFKEVEALTGLTHAYDRLDLPLKAPLDLTPFREPRPLAGLTPKGVDTLDGVKWLY 423 Query: 408 ---RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 ++ RASGTE ++RI E ++ ++++ K++ Sbjct: 424 EEAWVLFRASGTEPVVRIYVEAQSPELVRALLEEARKLV 462 >2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A* Length = 544 Score = 161 bits (407), Expect = 3e-40 Identities = 74/466 (15%), Positives = 141/466 (30%), Gaps = 122/466 (26%) Query: 44 RVVIGKDTRLSGYMLENSLVAGFTAA-GMDAFILGPIPSPAVAMLTRSLRADVGVMISAS 102 VVI +D+R S L + + GF + G +P + +TR+ Sbjct: 134 NVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRT------------ 181 Query: 103 HNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE 162 N D Y Sbjct: 182 LNDPDFG--------------------------------------------KPTEDGYYS 197 Query: 163 HVKRTLPRDVT-----LQGLRIVVDCANGASYKVAPEVFWELGADVVVI------GDKPN 211 + ++ T + + I +D ANG E+ + + +PN Sbjct: 198 KLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQELLEKYLHKEISFTVVNGDYKQPN 257 Query: 212 GININLDCGSTNVLSL-QRKVHEVRADIGIALDGDGDRVIIVDEK----GAIVNGDQIMA 266 +N + + V V + + DGD DR+I + +++GD++ Sbjct: 258 LLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDADRLICYYQNNDNKFKLLDGDKLST 317 Query: 267 LIAREWMSHSLLRGNG--------IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYM 318 L A + T + + L + ++ T G +++ Sbjct: 318 LFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTKYVEDVLKIPVRCTPTGVKHLHHEA 377 Query: 319 KNNGFNVGGEQSGHIIL--------------------------------SDYGSTGDGLV 346 +N V E +GH + + GD + Sbjct: 378 ENFDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDNEAKAIKVLQNFSQLINQTVGDAIS 437 Query: 347 AALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGI 406 L VL + S + + + P L V V D SI +++ + + + + I Sbjct: 438 DLLAVLIVVHYLKLSPSDWDNEYTDLPNKLVKVIVPDRSIFKTTNAERTLVEPKGMQDEI 497 Query: 407 D---------RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 D R VRASGTE +R+ AE D + ++ + +++++ Sbjct: 498 DKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSKAVSELV 543 Score = 73.6 bits (179), Expect = 9e-14 Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 93 ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLE 134 VGVMI+ASHNP +DNG+K+ P G + + E L Sbjct: 57 KTVGVMITASHNPPEDNGVKVVDPLGSMLESSWEKYATDLAN 98 >1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1 Length = 112 Score = 60.0 bits (145), Expect = 1e-09 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 9/90 (10%) Query: 363 STICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGID---------RLIVRA 413 + + + P V V D +++++ + I+ R VR Sbjct: 4 GSSGAIYVDLPNRQLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRP 63 Query: 414 SGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443 SGTE ++R+ AE + R+ +++ ++ Sbjct: 64 SGTEDIVRVYAEANSQESADRLAYEVSLLV 93 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 46.1 bits (109), Expect = 2e-05 Identities = 60/291 (20%), Positives = 94/291 (32%), Gaps = 113/291 (38%) Query: 31 AVGYLFRGKKKHRRVVIGK-------DTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPA 83 A+ LF IG +T L +LE+SL G PSP Sbjct: 299 AITVLFF---------IGVRCYEAYPNTSLPPSILEDSLENNE----------GV-PSP- 337 Query: 84 VAMLT-RSL-RADVGVMISA--SHNPYQDN--GIKLF-GPDGYKVSTDIEDRIETLLEDD 136 ML+ +L + V ++ SH P I L G VS + +L Sbjct: 338 --MLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISLVNGAKNLVVSGPPQ----SLY--G 388 Query: 137 LTSYL------SCYDS--IGHAKRVDGVHDRYI---------------EHVKRTL-PRDV 172 L L S D I ++R +R++ + + + L +V Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448 Query: 173 TLQG--LRI-VVDCANGA-----SYKVAPE---------VFWE----LGAD-VVVIGDKP 210 + ++I V D +G+ S ++ V WE A ++ G P Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--P 506 Query: 211 NGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNG 261 G + G VL+ + K DG G RVI+ G + Sbjct: 507 GGAS---GLG---VLTHRNK------------DGTGVRVIVA---GTLDIN 536 Score = 42.6 bits (100), Expect = 2e-04 Identities = 66/351 (18%), Positives = 107/351 (30%), Gaps = 164/351 (46%) Query: 75 ILGPIPSPAVAMLTRSLRADVG--------VMISASHNP--YQDNGIK----LF--G--- 115 +LG P L L+ G V I+ + + + + K LF G Sbjct: 255 LLGFTP----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310 Query: 116 ----PDGYKVSTDIEDRIETLLEDDL-------TSYLSCYDSIGHAKRVDGVHDRYIEHV 164 P+ T + ++LED L + LS I + + + V D Y+ Sbjct: 311 YEAYPN-----TSLP---PSILEDSLENNEGVPSPMLS----ISNLTQ-EQVQD-YVNKT 356 Query: 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKP----NGININL--- 217 LP ++ + NGA ++VV G P G+N+ L Sbjct: 357 NSHLPAGK-----QVEISLVNGAK-------------NLVVSG--PPQSLYGLNLTLRKA 396 Query: 218 ------DCGSTNVLSLQRKV-------------H---------EVRADI---GIALDGDG 246 D + + +RK+ H + D+ ++ + Sbjct: 397 KAPSGLD--QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK- 453 Query: 247 DRVIIV----------DEKGAIVNGDQIMALIARE---W-------MSHSLLRGNGIVTT 286 D I V G+I ++I+ I R W +H L G G Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSIS--ERIVDCIIRLPVKWETTTQFKATHILDFGPG---- 507 Query: 287 VMSNIGLERFIAGLGLSLKR----TEVGDRYIM----------EYMKNNGF 323 G +GLG+ R T G R I+ +Y GF Sbjct: 508 -----G----ASGLGVLTHRNKDGT--GVRVIVAGTLDINPDDDY----GF 543 Score = 29.5 bits (66), Expect = 1.6 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 90/210 (42%) Query: 293 LERFIAGLGLSLKR----TEVGDRYIMEYMKNNGFNV-----GGEQ--SGHIILSDYGST 341 + I +L T ++ + + G N+ DY Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKV---FTQ--GLNILEWLENPSNTPD-----KDY--- 230 Query: 342 GDGLVAA---------LQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSI 392 L++ +Q+ Y+ V+ P LRS +K + +S + Sbjct: 231 ---LLSIPISCPLIGVIQLAHYV------VT--AKLLGFTPGELRS-YLKGAT-GHSQGL 277 Query: 393 VQAIADAESE--------------------LRG--------IDRLIVRAS-----GTES- 418 V A+A AE++ +R + I+ S G S Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337 Query: 419 -L-IRIMAEGDDLSR--IKRIVDDLAKVIP 444 L I +L++ ++ V+ +P Sbjct: 338 MLSIS------NLTQEQVQDYVNKTNSHLP 361 >2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi} Length = 318 Score = 32.5 bits (73), Expect = 0.21 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 6/48 (12%) Query: 234 VRADIGIALDGDGDRVIIV------DEKGAIVNGDQIMALIAREWMSH 275 +R ++G+ DG + + + +MA +AR Sbjct: 261 LRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALMAQVARRLRDR 308 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.2 bits (67), Expect = 0.88 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 20/108 (18%) Query: 36 FRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPIPSPAVAMLTRSLR 92 RG K R KD + +L+ S + +A ++ ++ GPI +P A T Sbjct: 1058 LRGMFKDRF----KDEPVQNDILQESFINTMSA-WVNMLLISSSGPIKTPVGACATSVES 1112 Query: 93 ADVGV----------MISASHNPYQDNGIKLFGPDGYKVSTDIEDRIE 130 D+GV I ++ +Q+ G FG K +++ + E Sbjct: 1113 VDIGVETILSGKARICIVGGYDDFQEEGSFEFG--NMKATSNTLEEFE 1158 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 Score = 28.1 bits (62), Expect = 4.5 Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 6/152 (3%) Query: 108 DNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRT 167 + I+L G K+ + + L Y + + I Sbjct: 242 NFEIELMKDLGVKIICGKSLSENEITLNTLKEE--GYKAAFIGIGLPEPKTDDIFQGLTQ 299 Query: 168 LPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSL 227 T + +V ++ A + V+V+G + DC ++ + Sbjct: 300 DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG----AGDTAFDCATSALRCG 355 Query: 228 QRKVHEVRADIGIALDGDGDRVIIVDEKGAIV 259 R+V V + + + V + E+ Sbjct: 356 ARRVFLVFRKGFVNIRAVPEEVELAKEEKCEF 387 >1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A* Length = 408 Score = 27.8 bits (60), Expect = 4.8 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG 212 +P+ L GLR VV + A ++F E GA+V+ I + Sbjct: 6 HLPMPKFGPLAGLR-VVFSGIEIAGPFAGQMFAEWGAEVIWI-ENVAW 51 >3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica} Length = 292 Score = 27.4 bits (60), Expect = 6.1 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 31/142 (21%) Query: 169 PRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ----LDCGSTNV 224 +D+T++GL V D+V + + + + V Sbjct: 33 EKDITVRGLEAVKS------------------CDLVFLEHYTAILQCDVAKLEEFYGKKV 74 Query: 225 LSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIV 284 + R + E AD + + +V GD + + GI Sbjct: 75 IIGDRDLVETEADQILEPAKTKNVA-------LLVVGD--VYGATTHSDIFVRCQKMGIE 125 Query: 285 TTVMSNIGLERFIAGLGLSLKR 306 V+ N + I GL L R Sbjct: 126 VKVIHNASIMNAIGCSGLQLYR 147 >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* Length = 312 Score = 27.4 bits (60), Expect = 7.2 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 3/116 (2%) Query: 93 ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKR 152 AD+ + ++ P E L + + + H++ Sbjct: 169 ADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEF 228 Query: 153 VDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCAN-GASYKVAPEVFWELGADVVVIG 207 V G +K G+++ N G Y EV + G+D++++G Sbjct: 229 VVGFISGSRVSMKPEFLHLTP--GVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVG 282 >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Length = 262 Score = 27.1 bits (59), Expect = 8.5 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 171 DVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS------TNV 224 +L +R + A+G E+ W G + + I+ + G N Sbjct: 153 PESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNG 212 Query: 225 LSLQRKVHEVRADI--GIALDGDGDRVII 251 + + D+ GIA D + R+ + Sbjct: 213 ILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8} Length = 345 Score = 26.9 bits (58), Expect = 9.3 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Query: 235 RADIGIALDGDGDRVIIV---DE--KGAIVNGDQIMALI 268 ADIG L+ D R++++ D KG + Q + + Sbjct: 291 YADIGFELEEDTGRLVVMTAIDNLVKGTAGHALQALNVR 329 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.140 0.403 Gapped Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,974,129 Number of extensions: 196000 Number of successful extensions: 844 Number of sequences better than 10.0: 1 Number of HSP's gapped: 800 Number of HSP's successfully gapped: 41 Length of query: 448 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 353 Effective length of database: 3,390,050 Effective search space: 1196687650 Effective search space used: 1196687650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (27.0 bits)