RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(448 letters)
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme-ligand complex, enzyme-metal
complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas
aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X*
2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 337 bits (864), Expect = 4e-93
Identities = 117/461 (25%), Positives = 196/461 (42%), Gaps = 35/461 (7%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
F IRG +T IG A+G + V +G+D RLSG L L+ G
Sbjct: 14 FRAYDIRGVVGD-TLTAETAYWIGRAIGSESL-ARGEPCVAVGRDGRLSGPELVKQLIQG 71
Query: 66 FTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDI 125
G +G +P+P + L GVM++ SHNP NG K+ + I
Sbjct: 72 LVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGETLANEQI 131
Query: 126 EDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCAN 185
+ E + ++DL S + + + RY + ++ + + +++VVDC N
Sbjct: 132 QALRERIEKNDLASGVGSVEQVDI-------LPRYFKQIRDDIAM---AKPMKVVVDCGN 181
Query: 186 GASYKVAPEVFWELGADVVVIGDKPNGININLDCGST---NVLSLQRKVHEVRADIGIAL 242
G + +AP++ LG V+ + + +G N N+ L KV AD+G+A
Sbjct: 182 GVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAF 241
Query: 243 DGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGL 302
DGDGDRV +V G I+ D+++ L A++ +S G I+ V L I+G G
Sbjct: 242 DGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSR--NPGADIIFDVKCTRRLIALISGYGG 299
Query: 303 SLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGD-GLVAALQVLRYIKQYDKP 361
+ G I + MK G + GE SGH+ + D G+ +A ++L + Q +
Sbjct: 300 RPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRD 359
Query: 362 VSTICHCFEEYPQFLRS----VSVKDTSILNSSSIVQAIAD-AESELRGID--------- 407
+ F +P + + ++V + S +Q A E + +D
Sbjct: 360 SEHV---FSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKG 416
Query: 408 RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMIDS 448
+VRAS T ++ + E D ++RI + +DS
Sbjct: 417 WGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDS 457
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magnesium,
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 323 bits (828), Expect = 5e-89
Identities = 165/441 (37%), Positives = 252/441 (57%), Gaps = 6/441 (1%)
Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63
++FGTDGIRG+ IT F ++G AVG L K + V++G+DTR SG L+ +LV
Sbjct: 3 KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALV 62
Query: 64 AGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVST 123
+G AAG+D LG +P+P VA +T RA G +I+ASHN + DNGIKLF +G+K+
Sbjct: 63 SGLNAAGIDVLDLGVVPTPVVAFMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFKLDD 122
Query: 124 DIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDC 183
+E+ +E +++ D G K + D YIE + + V ++VVDC
Sbjct: 123 ALEEEVEDMIDGD--FIYQPQFKFGSYKILANAIDEYIESIYSRFAKFVNY-KGKVVVDC 179
Query: 184 ANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVRADIGIALD 243
A+GA+ + + G + V I P+G+NIN+ CG+T V ++++ V E +AD+GI+LD
Sbjct: 180 AHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGISLD 239
Query: 244 GDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLS 303
GD DR+IIVDE G ++GD I+ ++A+ NGIV T M+N+ E +
Sbjct: 240 GDADRIIIVDENGQEIDGDGILNILAQYSDICG--GTNGIVGTQMTNMSYENHYRANKIP 297
Query: 304 LKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVS 363
R++VGDRY++E + G+ +GGE SGH+I ++G+TGDGL A+Q+L Q DKPVS
Sbjct: 298 FIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVS 357
Query: 364 TICHCFEEYPQFLRSVSVKD-TSILNSSSIVQAIADAESELRGIDRLIVRASGTESLIRI 422
E Q L +V + + + + + D E L R+++R SGTE ++R+
Sbjct: 358 EFKLQGELMQQTLINVPLTKKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRV 417
Query: 423 MAEGDDLSRIKRIVDDLAKVI 443
M E DD S + L + +
Sbjct: 418 MVEADDKSLATNEAEYLVEKV 438
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal complex, isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 244 bits (623), Expect = 3e-65
Identities = 136/453 (30%), Positives = 223/453 (49%), Gaps = 18/453 (3%)
Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLENSL 62
+ FGT G+RG +N ITP F M+IG+A G L R +K VV+G+DTR+SG ML+ +L
Sbjct: 3 KLFGTFGVRGIANE-KITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEAL 61
Query: 63 VAGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVS 122
++G + G D +G P+PAV T+ AD G +I+ASHNP + NGIKL P+G +
Sbjct: 62 ISGLLSVGCDVIDVGIAPTPAVQWATKHFNADGGAVITASHNPPEYNGIKLLEPNGMGLK 121
Query: 123 TDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLP-RDVTLQGLRIVV 181
+ E +E L + + + IG +R D + YIE +K + + + +VV
Sbjct: 122 KEREAIVEELFFKEDFD-RAKWYEIGEVRRED-IIKPYIEAIKSKVDVEAIKKRKPFVVV 179
Query: 182 DCANGASYKVAPEVFWELGADVVVIGDKPNGININLDC--GSTNVLSLQRKVHEVRADIG 239
D +NGA P + ELG V+ + +P+G + N+ V + AD G
Sbjct: 180 DTSNGAGSLTLPYLLRELGCKVITVNAQPDGYFPARNPEPNEENLKEFMEIVKALGADFG 239
Query: 240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAG 299
+A DGD DR + +DE G + GD+ AL+A + G +VTTV ++ L+
Sbjct: 240 VAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKEK--GGGLLVTTVATSNLLDDIAKK 297
Query: 300 LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYD 359
G + RT+VGD + + N +GGE++G +I ++ DG + +V+ +
Sbjct: 298 HGAKVMRTKVGDLIVARALYENNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAKSG 357
Query: 360 KPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGID---------RLI 410
K S + +Y Q V+ + + + + + D ++
Sbjct: 358 KKFSELIDELPKYYQIKTKRHVEGDRHAIVNKVAEMARERGYTVDTTDGAKIIFEDGWVL 417
Query: 411 VRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
VRASGTE +IRI +E + + ++ +++
Sbjct: 418 VRASGTEPIIRIFSEAKSKEKAQEYLNLGIELL 450
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 229 bits (583), Expect = 1e-60
Identities = 101/533 (18%), Positives = 176/533 (33%), Gaps = 98/533 (18%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHR-RVVIGKDTRLSGYMLENSLV 63
GT G+R K + PN++ ++ L + + K + + +G D R S++
Sbjct: 21 PGTSGLRKKVSEA-TQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSII 79
Query: 64 AGFTAAGMDAFIL---GPIPSPAVAMLTRSLRADV-----GVMISASHNP----YQDNGI 111
A + + G + +PA + R + +V G++++ASHNP + D GI
Sbjct: 80 RLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFGI 139
Query: 112 KLFGPDGYKVSTDIEDRIETLLE------------------DDLTSYLSCYDSIGHAKRV 153
K G D D+I T D + Y + +
Sbjct: 140 KFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFE 199
Query: 154 DGVHD---RYIEHVKRTLPRDV-----TLQGLRIVVDCANGASYKVAPEVFWELGADVVV 205
V D Y + +++ D+ + + D +G + A +F L
Sbjct: 200 VKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKE 259
Query: 206 I----GDKPNGININLDCGSTNVLSLQ-------RKVHEVRADIGIALDGDGDRVIIVDE 254
+ + D T L +K G A DGD DR +I+
Sbjct: 260 SLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGR 319
Query: 255 KGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYI 314
+ + D + + A + + S L++ A G+ L T G ++
Sbjct: 320 QFFVTPSDSLAVIAANANLIFKNGLLGAARSMPTSG-ALDKVAAKNGIKLFETPTGWKFF 378
Query: 315 MEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE--- 371
M N+ GE+S S++ DG+ A L L + +K E
Sbjct: 379 GNLMDAGLINLCGEESFGTG-SNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQ 437
Query: 372 -YPQFLRSVSVKDTSILNSSSIVQAI-------------------ADAESELRGID---- 407
+ QF R+ + S+ + AD + +D
Sbjct: 438 YWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVS 497
Query: 408 -------------RLIVRASGTESL---IRIMAEGDDLSRIKRIVDD-LAKVI 443
R+I R SGT S+ IRI E + +I+ LA +I
Sbjct: 498 KNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHETATALANII 550
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 222 bits (564), Expect = 2e-58
Identities = 112/454 (24%), Positives = 206/454 (45%), Gaps = 18/454 (3%)
Query: 4 RFFGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLV 63
+ FGTDG+RG N +TP ++++ A+G F K+ ++++G+D R G ML +
Sbjct: 3 KLFGTDGVRGIVNK-ELTPELVLKLSKAIGTFF---GKNSKILVGRDVRAGGDMLVKIVE 58
Query: 64 AGFTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVST 123
G + G++ + G P+PA+ ++L D GV+I+ASHNP NGIK+ DG ++
Sbjct: 59 GGLLSVGVEVYDGGMAPTPALQYAVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRR 118
Query: 124 DIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLP-RDVTLQGLRIVVD 182
+ E+ IE L + + + KR D V Y+ + + + + ++++D
Sbjct: 119 EKENEIEDLFFTERFNTIEWSSLTTEVKREDRVISTYVNGILSHVDIEKIKKKNYKVLID 178
Query: 183 CANGASYKVAPEVFWELGADVVVIGDKPN--GININLDCGSTNVLSLQRKVHEVRADIGI 240
AN P V LG + I + + ++ V ++ D+G+
Sbjct: 179 PANSVGALSTPLVARALGCKIYTINGNLDPLFSARQPEPTFDSLKETAEVVKTLKVDLGV 238
Query: 241 ALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGL 300
A DGD DR I +D +G + GD+ L++ + IVT V S+ +E +++
Sbjct: 239 AHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKIVTAVSSSSLVEEYLSKY 298
Query: 301 GLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDK 360
+ + T+VG I + + G E++G + + DG ++ +L + +
Sbjct: 299 NIQVDWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENV 358
Query: 361 PVSTICHCFEEYPQFLRSVSVKD-----------TSILNSSSIVQAIADAESELRGIDRL 409
+ + +Y V +K + ++SS+ D +
Sbjct: 359 SSAELFDRLPKYYLVKTKVDLKPGLMVEEIYKKILEVYSTSSVKAITIDGVKIIGKDFWF 418
Query: 410 IVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
+VR SGTE +IRIMAE D + +V++L K++
Sbjct: 419 LVRKSGTEPIIRIMAEAKDENVANNLVNELKKIV 452
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase; HET: SEP;
2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1
c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A*
1c47_A*
Length = 561
Score = 215 bits (548), Expect = 1e-56
Identities = 98/532 (18%), Positives = 181/532 (34%), Gaps = 92/532 (17%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVG-YLFRGKKKHRRVVIGKDTRLSGYMLENSLVA 64
GT G+R + F + N+ ++ + +++ +V+G D R +V
Sbjct: 16 PGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVR 75
Query: 65 GFTAAGMDAFIL---GPIPSPAVAMLTRSLRADVGVMISASHNPYQDN---GIKLFGPDG 118
A G+ ++ G + +PAV+ + R ++A G++++ASHNP N GIK +G
Sbjct: 76 IAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNG 135
Query: 119 YKVSTDIEDRIETLLEDDLTSYLSCYDSI-----------------GHAKRVDGVHDRYI 161
I D+I + + + + + + Y
Sbjct: 136 GPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYA 195
Query: 162 EHVKRTLPRDV------TLQGLRIVVDCANGASYKVAPEVFWELGA----DVVVIGDKPN 211
++ + L+I +D +G ++ E V +
Sbjct: 196 TMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLED 255
Query: 212 GININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIARE 271
+ D T L + D G A DGDGDR +I+ + G VN +A+IA
Sbjct: 256 FGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAAN 315
Query: 272 WMSHSLLRGNG---IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGE 328
S + G ++ ++ L+R ++L T G ++ M + ++ GE
Sbjct: 316 IFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGE 375
Query: 329 QSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILN 388
+S SD+ DGL A L L + + V I + + +F R+ +
Sbjct: 376 ESFGTG-SDHIREKDGLWAVLAWLSILATRKQSVEDILK--DHWHKFGRNFFTRYDYEEV 432
Query: 389 SSSIVQAIADAESELR---------------------------------------GI--- 406
+ + L G+
Sbjct: 433 EAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLI 492
Query: 407 ----DRLIVRASGTES---LIRIMAE--GDDLSRIKRIVDD-LAKVIPMIDS 448
R+I R SGT S IR+ + D ++I + LA +I +
Sbjct: 493 FADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALK 544
>2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium
LT2}
Length = 549
Score = 209 bits (532), Expect = 9e-55
Identities = 96/498 (19%), Positives = 161/498 (32%), Gaps = 61/498 (12%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
FGT G RG + ++ I A+ +GKDT S++
Sbjct: 45 FGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEV 104
Query: 66 FTAAGMDAFIL---GPIPSPAVAMLTRS-----LRADVGVMISASHNPYQDNGIKLFGPD 117
A G+D + G P+PAV+ G++I+ SHNP +D GIK P+
Sbjct: 105 LAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPN 164
Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDSI--------GHAKRVDGVHDRYIEHVKRTLP 169
G T++ +E L L I GH K VD V
Sbjct: 165 GGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDM 224
Query: 170 RDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVV----------IGDKPNGININLDC 219
+ GL + VD G+ + + ++ + I +DC
Sbjct: 225 AAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDC 284
Query: 220 GSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLR 279
S ++ + + D+ A D D DR IV G + + I + L
Sbjct: 285 SSECAMAGLLALRDKF-DLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWG 343
Query: 280 GNGI-VTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSD- 337
+ T++S+ ++R + LG L VG ++ ++ + + F GGE+S
Sbjct: 344 KDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRF 403
Query: 338 ----YGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE------YPQFLRSVSVKDTSIL 387
+ + DG++ L K + Y + S + + L
Sbjct: 404 DGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAAL 463
Query: 388 NS-------------SSIVQAIADAESELRGID---------RLIVRASGTESLIRIMAE 425
+ I + A I R SGTE +I E
Sbjct: 464 SKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCE 523
Query: 426 GDDLSRIKRIVDDLAKVI 443
++ ++ A I
Sbjct: 524 SFLGEEHRKQIEKEAVEI 541
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics, NPPSFA; 2.52A {Thermus thermophilus
HB8}
Length = 524
Score = 200 bits (508), Expect = 6e-52
Identities = 101/496 (20%), Positives = 179/496 (36%), Gaps = 60/496 (12%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
FGT G RG S T ++ I A+ L + + KDT + ++
Sbjct: 26 FGTSGHRGSSLKATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSV 85
Query: 66 FTAAGMDAFIL---GPIPSPAVAMLTRSLRADV-----GVMISASHNPYQDNGIKLFGPD 117
F A G++ + P+P V++ A GV+++ SHNP +D G K P
Sbjct: 86 FAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNPPEDGGFKYNPPT 145
Query: 118 GYKVSTDIED----RIETLLEDDLTS--YLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRD 171
G + I R LL++ L L +++ AK D + +
Sbjct: 146 GGPANARITRAIEERANALLQEGLKGVKRLPLREALARAKPFDYAGLYVEKVAEAVDLEA 205
Query: 172 VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG----------ININLDCGS 221
+ GLRI VD GAS +V + G + V+ + I +DC S
Sbjct: 206 IRASGLRIGVDPLGGASLRVWERLAESHGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSS 265
Query: 222 TNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGN 281
+ R D+ I D D DR IV +G + + A + + + S G
Sbjct: 266 PYA-MAGLLALKDRFDLAIGNDPDADRHGIVTPRGLMNPNHYLAAALHHLYTTRS-WPGA 323
Query: 282 GIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHII-----LS 336
+ T +++ L+R LG + T VG ++ + + GE+S
Sbjct: 324 KVGKTAVTSALLDRVAQALGREVYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGR 383
Query: 337 DYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEE------YPQFLRSVSVKD------- 383
+ + DG++ L + + + + E Y + VS +
Sbjct: 384 PFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEKLGRPYYARKDLPVSPEAKARLARL 443
Query: 384 ------TSILNSSSIVQAIADAESELRGID---------RLIVRASGTESLIRIMAEG-D 427
S L ++Q + A + VR SGTE + ++ AE
Sbjct: 444 SAKEVHPSTLAGEPVLQVLDRATGNGEPLGGIKVVAANAWFAVRPSGTEDVAKVYAESFL 503
Query: 428 DLSRIKRIVDDLAKVI 443
+ ++R++++ ++
Sbjct: 504 GEAHLERVLEEATALL 519
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 194 bits (492), Expect = 4e-50
Identities = 97/459 (21%), Positives = 181/459 (39%), Gaps = 31/459 (6%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
FGT+G RG T + R+ A G ++ VV+G DTR +L
Sbjct: 14 FGTEGFRGVIARE-FTFATLHRLAEAYGRHLL-ERGGGLVVVGHDTRFLADAFARALSGH 71
Query: 66 FTAAGMDAFIL-GPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTD 124
G+ +L GP+P+P ++ R L+A G M++ASHNP Q G+K G ++ +
Sbjct: 72 LAGMGLKVVLLKGPVPTPLLSFAVRHLKAAGGAMLTASHNPPQYLGVKFKDATGGPIAQE 131
Query: 125 IEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCA 184
IE L+ ++ + G + +D + + ++ + D
Sbjct: 132 EAKAIEALVPEEARAL------EGAYETLDLREAYFEALKAHLDLKALSGFSGVLYHDSM 185
Query: 185 NGASYKVAPEVFWELGADV--VVIGDKPNGININLDCG---STNVLSLQRKVHEVRADIG 239
GA +G ++ I ++P+ + ++ ++L E
Sbjct: 186 GGAGAGFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFA 245
Query: 240 IALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAG 299
+A DGD DRV +V G N Q++ +A V L+R
Sbjct: 246 VATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRKG--HRGRAVKNFAVTWLLDRLGER 303
Query: 300 LGLSLKRTEVGDRYIMEYMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYD 359
LG + T VG ++I E +GGE+SG + ++ DG++ +L +L +
Sbjct: 304 LGFGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATG 363
Query: 360 KPVSTICHCFEEYPQFLRS---VSVKDTSILNSSSIVQAIADAESELRGID--------- 407
K ++ E + + + + L+ + + A +G+D
Sbjct: 364 KDLAEQFKEVEALTGLTHAYDRLDLPLKAPLDLTPFREPRPLAGLTPKGVDTLDGVKWLY 423
Query: 408 ---RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
++ RASGTE ++RI E ++ ++++ K++
Sbjct: 424 EEAWVLFRASGTEPVVRIYVEAQSPELVRALLEEARKLV 462
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 161 bits (407), Expect = 3e-40
Identities = 74/466 (15%), Positives = 141/466 (30%), Gaps = 122/466 (26%)
Query: 44 RVVIGKDTRLSGYMLENSLVAGFTAA-GMDAFILGPIPSPAVAMLTRSLRADVGVMISAS 102
VVI +D+R S L + + GF + G +P + +TR+
Sbjct: 134 NVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRT------------ 181
Query: 103 HNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIE 162
N D Y
Sbjct: 182 LNDPDFG--------------------------------------------KPTEDGYYS 197
Query: 163 HVKRTLPRDVT-----LQGLRIVVDCANGASYKVAPEVFWELGADVVVI------GDKPN 211
+ ++ T + + I +D ANG E+ + + +PN
Sbjct: 198 KLAKSFQEIYTICESNNEKIDITIDAANGVGAPKIQELLEKYLHKEISFTVVNGDYKQPN 257
Query: 212 GININLDCGSTNVLSL-QRKVHEVRADIGIALDGDGDRVIIVDEK----GAIVNGDQIMA 266
+N + + V V + + DGD DR+I + +++GD++
Sbjct: 258 LLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDADRLICYYQNNDNKFKLLDGDKLST 317
Query: 267 LIAREWMSHSLLRGNG--------IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYM 318
L A + T + + L + ++ T G +++
Sbjct: 318 LFALFLQQLFKQIDPTKISLNIGVVQTAYANGSSTKYVEDVLKIPVRCTPTGVKHLHHEA 377
Query: 319 KNNGFNVGGEQSGHIIL--------------------------------SDYGSTGDGLV 346
+N V E +GH + + GD +
Sbjct: 378 ENFDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDNEAKAIKVLQNFSQLINQTVGDAIS 437
Query: 347 AALQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGI 406
L VL + S + + + P L V V D SI +++ + + + + I
Sbjct: 438 DLLAVLIVVHYLKLSPSDWDNEYTDLPNKLVKVIVPDRSIFKTTNAERTLVEPKGMQDEI 497
Query: 407 D---------RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
D R VRASGTE +R+ AE D + ++ + +++++
Sbjct: 498 DKLVAQYPNGRSFVRASGTEDAVRVYAEADTQNNVEELSKAVSELV 543
Score = 73.6 bits (179), Expect = 9e-14
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 93 ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLE 134
VGVMI+ASHNP +DNG+K+ P G + + E L
Sbjct: 57 KTVGVMITASHNPPEDNGVKVVDPLGSMLESSWEKYATDLAN 98
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism,
structural genomics, riken structural
genomics/proteomics initiative, RSGI, isomerase; NMR
{Mus musculus} SCOP: d.129.2.1
Length = 112
Score = 60.0 bits (145), Expect = 1e-09
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 363 STICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGID---------RLIVRA 413
+ + + P V V D +++++ + I+ R VR
Sbjct: 4 GSSGAIYVDLPNRQLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRP 63
Query: 414 SGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
SGTE ++R+ AE + R+ +++ ++
Sbjct: 64 SGTEDIVRVYAEANSQESADRLAYEVSLLV 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.1 bits (109), Expect = 2e-05
Identities = 60/291 (20%), Positives = 94/291 (32%), Gaps = 113/291 (38%)
Query: 31 AVGYLFRGKKKHRRVVIGK-------DTRLSGYMLENSLVAGFTAAGMDAFILGPIPSPA 83
A+ LF IG +T L +LE+SL G PSP
Sbjct: 299 AITVLFF---------IGVRCYEAYPNTSLPPSILEDSLENNE----------GV-PSP- 337
Query: 84 VAMLT-RSL-RADVGVMISA--SHNPYQDN--GIKLF-GPDGYKVSTDIEDRIETLLEDD 136
ML+ +L + V ++ SH P I L G VS + +L
Sbjct: 338 --MLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISLVNGAKNLVVSGPPQ----SLY--G 388
Query: 137 LTSYL------SCYDS--IGHAKRVDGVHDRYI---------------EHVKRTL-PRDV 172
L L S D I ++R +R++ + + + L +V
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 173 TLQG--LRI-VVDCANGA-----SYKVAPE---------VFWE----LGAD-VVVIGDKP 210
+ ++I V D +G+ S ++ V WE A ++ G P
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG--P 506
Query: 211 NGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNG 261
G + G VL+ + K DG G RVI+ G +
Sbjct: 507 GGAS---GLG---VLTHRNK------------DGTGVRVIVA---GTLDIN 536
Score = 42.6 bits (100), Expect = 2e-04
Identities = 66/351 (18%), Positives = 107/351 (30%), Gaps = 164/351 (46%)
Query: 75 ILGPIPSPAVAMLTRSLRADVG--------VMISASHNP--YQDNGIK----LF--G--- 115
+LG P L L+ G V I+ + + + + K LF G
Sbjct: 255 LLGFTP----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 116 ----PDGYKVSTDIEDRIETLLEDDL-------TSYLSCYDSIGHAKRVDGVHDRYIEHV 164
P+ T + ++LED L + LS I + + + V D Y+
Sbjct: 311 YEAYPN-----TSLP---PSILEDSLENNEGVPSPMLS----ISNLTQ-EQVQD-YVNKT 356
Query: 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKP----NGININL--- 217
LP ++ + NGA ++VV G P G+N+ L
Sbjct: 357 NSHLPAGK-----QVEISLVNGAK-------------NLVVSG--PPQSLYGLNLTLRKA 396
Query: 218 ------DCGSTNVLSLQRKV-------------H---------EVRADI---GIALDGDG 246
D + + +RK+ H + D+ ++ +
Sbjct: 397 KAPSGLD--QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK- 453
Query: 247 DRVIIV----------DEKGAIVNGDQIMALIARE---W-------MSHSLLRGNGIVTT 286
D I V G+I ++I+ I R W +H L G G
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSIS--ERIVDCIIRLPVKWETTTQFKATHILDFGPG---- 507
Query: 287 VMSNIGLERFIAGLGLSLKR----TEVGDRYIM----------EYMKNNGF 323
G +GLG+ R T G R I+ +Y GF
Sbjct: 508 -----G----ASGLGVLTHRNKDGT--GVRVIVAGTLDINPDDDY----GF 543
Score = 29.5 bits (66), Expect = 1.6
Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 90/210 (42%)
Query: 293 LERFIAGLGLSLKR----TEVGDRYIMEYMKNNGFNV-----GGEQ--SGHIILSDYGST 341
+ I +L T ++ + + G N+ DY
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKV---FTQ--GLNILEWLENPSNTPD-----KDY--- 230
Query: 342 GDGLVAA---------LQVLRYIKQYDKPVSTICHCFEEYPQFLRSVSVKDTSILNSSSI 392
L++ +Q+ Y+ V+ P LRS +K + +S +
Sbjct: 231 ---LLSIPISCPLIGVIQLAHYV------VT--AKLLGFTPGELRS-YLKGAT-GHSQGL 277
Query: 393 VQAIADAESE--------------------LRG--------IDRLIVRAS-----GTES- 418
V A+A AE++ +R + I+ S G S
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 419 -L-IRIMAEGDDLSR--IKRIVDDLAKVIP 444
L I +L++ ++ V+ +P
Sbjct: 338 MLSIS------NLTQEQVQDYVNKTNSHLP 361
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A
beta-lactamase fold, transcription regulation,
beta-lactamase induction, transcription; 1.80A
{Streptomyces cacaoi}
Length = 318
Score = 32.5 bits (73), Expect = 0.21
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 234 VRADIGIALDGDGDRVIIV------DEKGAIVNGDQIMALIAREWMSH 275
+R ++G+ DG + + + +MA +AR
Sbjct: 261 LRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALMAQVARRLRDR 308
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (67), Expect = 0.88
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 36 FRGKKKHRRVVIGKDTRLSGYMLENSLVAGFTAAGMDAFIL---GPIPSPAVAMLTRSLR 92
RG K R KD + +L+ S + +A ++ ++ GPI +P A T
Sbjct: 1058 LRGMFKDRF----KDEPVQNDILQESFINTMSA-WVNMLLISSSGPIKTPVGACATSVES 1112
Query: 93 ADVGV----------MISASHNPYQDNGIKLFGPDGYKVSTDIEDRIE 130
D+GV I ++ +Q+ G FG K +++ + E
Sbjct: 1113 VDIGVETILSGKARICIVGGYDDFQEEGSFEFG--NMKATSNTLEEFE 1158
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 28.1 bits (62), Expect = 4.5
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 6/152 (3%)
Query: 108 DNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRT 167
+ I+L G K+ + + L Y + + I
Sbjct: 242 NFEIELMKDLGVKIICGKSLSENEITLNTLKEE--GYKAAFIGIGLPEPKTDDIFQGLTQ 299
Query: 168 LPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSL 227
T + +V ++ A + V+V+G + DC ++ +
Sbjct: 300 DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG----AGDTAFDCATSALRCG 355
Query: 228 QRKVHEVRADIGIALDGDGDRVIIVDEKGAIV 259
R+V V + + + V + E+
Sbjct: 356 ARRVFLVFRKGFVNIRAVPEEVELAKEEKCEF 387
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 27.8 bits (60), Expect = 4.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 165 KRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG 212
+P+ L GLR VV + A ++F E GA+V+ I +
Sbjct: 6 HLPMPKFGPLAGLR-VVFSGIEIAGPFAGQMFAEWGAEVIWI-ENVAW 51
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 27.4 bits (60), Expect = 6.1
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 31/142 (21%)
Query: 169 PRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ----LDCGSTNV 224
+D+T++GL V D+V + + + + V
Sbjct: 33 EKDITVRGLEAVKS------------------CDLVFLEHYTAILQCDVAKLEEFYGKKV 74
Query: 225 LSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIVNGDQIMALIAREWMSHSLLRGNGIV 284
+ R + E AD + + +V GD + + GI
Sbjct: 75 IIGDRDLVETEADQILEPAKTKNVA-------LLVVGD--VYGATTHSDIFVRCQKMGIE 125
Query: 285 TTVMSNIGLERFIAGLGLSLKR 306
V+ N + I GL L R
Sbjct: 126 VKVIHNASIMNAIGCSGLQLYR 147
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 27.4 bits (60), Expect = 7.2
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 93 ADVGVMISASHNPYQDNGIKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKR 152
AD+ + ++ P E L + + + H++
Sbjct: 169 ADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEF 228
Query: 153 VDGVHDRYIEHVKRTLPRDVTLQGLRIVVDCAN-GASYKVAPEVFWELGADVVVIG 207
V G +K G+++ N G Y EV + G+D++++G
Sbjct: 229 VVGFISGSRVSMKPEFLHLTP--GVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVG 282
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase,
pyrogl transferase; 1.70A {Zymomonas mobilis} PDB:
3nom_A
Length = 262
Score = 27.1 bits (59), Expect = 8.5
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 171 DVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGS------TNV 224
+L +R + A+G E+ W G + + I+ + G N
Sbjct: 153 PESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNG 212
Query: 225 LSLQRKVHEVRADI--GIALDGDGDRVII 251
+ + D+ GIA D + R+ +
Sbjct: 213 ILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics; 2.01A {Thermus
thermophilus HB8}
Length = 345
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 235 RADIGIALDGDGDRVIIV---DE--KGAIVNGDQIMALI 268
ADIG L+ D R++++ D KG + Q + +
Sbjct: 291 YADIGFELEEDTGRLVVMTAIDNLVKGTAGHALQALNVR 329
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.140 0.403
Gapped
Lambda K H
0.267 0.0409 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,974,129
Number of extensions: 196000
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 41
Length of query: 448
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 353
Effective length of database: 3,390,050
Effective search space: 1196687650
Effective search space used: 1196687650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (27.0 bits)