RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase
protein [Candidatus Liberibacter asiaticus str. psy62]
(448 letters)
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 116 bits (292), Expect = 3e-27
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHR-RVVIGKDTRLSGYMLENSLVA 64
GT G+R + F + N+ ++ ++ +V+G D R +V
Sbjct: 16 PGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVR 75
Query: 65 GFTAAGMDAFI---LGPIPSPAVAMLTRSLRADVGVMISASHNPYQ---DNGIKLFGPDG 118
A G+ + G + +PAV+ + R ++A G++++ASHNP D GIK +G
Sbjct: 76 IAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNG 135
Query: 119 YKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVD 154
I D+I + + Y I +VD
Sbjct: 136 GPAPEAITDKIFQIS-KTIEEYA-----ICPDLKVD 165
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 203
Score = 105 bits (262), Expect = 9e-24
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 20/164 (12%)
Query: 6 FGTDGIRGKSNTF---PITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSL 62
GT G+R K + NF+ I + K + +G D R S+
Sbjct: 19 PGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPK--NVLFVGGDGRYFNRQAIFSI 76
Query: 63 VAGFTAAGMDAFIL---GPIPSPAVAMLTRSLRADV-----GVMISASHNPY----QDNG 110
+ A + + G + +PA + R + +V G++++ASHNP D G
Sbjct: 77 IRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFG 136
Query: 111 IKLFGPDGYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVD 154
IK G D D+I T + YL+ K ++
Sbjct: 137 IKFNVRTGAPAPEDFTDQIYTHT-TKIKEYLTV--DYEFEKHIN 177
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 104
Score = 92.5 bits (229), Expect = 7e-20
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 158 DRYIEHVKRTLPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININ- 216
RY + ++ + + +++VVDC NG + +AP++ LG V+ + + +G N
Sbjct: 3 PRYFKQIRDDIAM---AKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNH 59
Query: 217 --LDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIV 259
N+ L KV AD+G+A DGDGDRV +V G I+
Sbjct: 60 HPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTII 104
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 146
Score = 91.0 bits (225), Expect = 2e-19
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Query: 6 FGTDGIRGKSNTFPITPNFMMRIGIAVGYLFRGKKKHRRVVIGKDTRLSGYMLENSLVAG 65
F IRG +T IG A+G + + V +G+D RLSG L L+ G
Sbjct: 6 FRAYDIRGVVGD-TLTAETAYWIGRAIGSESLARGEPC-VAVGRDGRLSGPELVKQLIQG 63
Query: 66 FTAAGMDAFILGPIPSPAVAMLTRSLRADVGVMISASHNPYQDNGIKLFGPDGYKVSTDI 125
G +G +P+P + L GVM++ SHNP NG K+ + I
Sbjct: 64 LVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVAGETLANEQI 123
Query: 126 EDRIETLLEDDLTSYLSCYDSIGHAKRVD 154
+ E + ++DL S +G ++VD
Sbjct: 124 QALRERIEKNDLAS------GVGSVEQVD 146
>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 87.8 bits (217), Expect = 2e-18
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 261 GDQIMALIAREWMSHSLLRGNGIVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEYMKN 320
D+++ L A++ +S G I+ V L I+G G + G I + MK
Sbjct: 2 PDRLLMLFAKDVVSR--NPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKE 59
Query: 321 NGFNVGGEQSGHIIL-SDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCF 369
G + GE SGH+ + DG+ +A ++L + Q + + F
Sbjct: 60 TGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAF 109
>d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 118
Score = 78.3 bits (192), Expect = 1e-15
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 16/114 (14%)
Query: 158 DRYIEHVKRTLPRD-----VTLQGLRIVVDCANGASYKVAPEVFWELGADVV--VIGDKP 210
Y + +++ D + + D +G + A +F L ++ P
Sbjct: 2 QDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDP 61
Query: 211 NG---------ININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEK 255
+ + ++K G A DGD DR +I+ +
Sbjct: 62 SEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQ 115
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 113
Score = 76.8 bits (188), Expect = 3e-15
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 158 DRYIEHVKRTLPRD------VTLQGLRIVVDCANGASYKVAPEVFWELGADVVVI----G 207
+ Y ++ + L+I +D +G ++ E
Sbjct: 2 EAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCV 61
Query: 208 DKPNGININLDCGSTNVLSLQRKVHEVRADIGIALDGDGDRVIIVDEKGAIV 259
+ + D T L + D G A DGDGDR +I+ + G V
Sbjct: 62 PLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFV 113
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 120
Score = 70.5 bits (172), Expect = 3e-13
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 261 GDQIMALIAREWMSHSLLRGNG---IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIMEY 317
D + + A +L+ NG ++ ++ L++ A G+ L T G ++
Sbjct: 3 SDSLAVIAAN----ANLIFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNL 58
Query: 318 MKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICHCFEEYPQF 375
M N+ GE+S S++ DG+ A L L + +K E Q+
Sbjct: 59 MDAGLINLCGEESFGTG-SNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQY 115
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 67.0 bits (163), Expect = 3e-12
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 260 NGDQIMALIAREWMSHSLLRGNG---IVTTVMSNIGLERFIAGLGLSLKRTEVGDRYIME 316
N +A+IA S + G ++ ++ L+R ++L T G ++
Sbjct: 1 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 60
Query: 317 YMKNNGFNVGGEQSGHIILSDYGSTGDGLVAALQVLRYIKQYDKPVSTICH-CFEEY 372
M + ++ GE+S SD+ DGL A L L + + V I + ++
Sbjct: 61 LMDASKLSLCGEESFGTG-SDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKF 116
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 59.2 bits (143), Expect = 7e-10
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 363 STICHCFEEYPQFLRSVSVKDTSILNSSSIVQAIADAESELRGID---------RLIVRA 413
+ + + P V V D +++++ + I+ R VR
Sbjct: 4 GSSGAIYVDLPNRQLKVKVADRRVISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRP 63
Query: 414 SGTESLIRIMAEGDDLSRIKRIVDDLAKVI 443
SGTE ++R+ AE + R+ +++ ++
Sbjct: 64 SGTEDIVRVYAEANSQESADRLAYEVSLLV 93
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 96
Score = 39.2 bits (91), Expect = 7e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 408 RLIVRASGTESLIRIMAEGDDLSRIKRIVDDLAKVIPMIDS 448
+VRAS T ++ + E D ++RI + +DS
Sbjct: 50 WGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDS 90
>d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas
aeruginosa, PER-1 [TaxId: 287]}
Length = 278
Score = 28.3 bits (62), Expect = 1.5
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 234 VRADIGIALDGDGDRVIIV----DEKGAIVNGDQIMALIAR 270
D+GI L DG +++ D + + I+A +A+
Sbjct: 225 ATNDLGIILLPDGRPLLVAVFVKDSAESSRTNEAIIAQVAQ 265
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 27.4 bits (59), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 168 LPRDVTLQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNG 212
+P+ L GLR VV + A ++F E GA+V+ I +
Sbjct: 3 MPKFGPLAGLR-VVFSGIEIAGPFAGQMFAEWGAEVIWI-ENVAW 45
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus
influenzae [TaxId: 727]}
Length = 308
Score = 27.1 bits (58), Expect = 3.3
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 392 IVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDD 428
A+A A + GI + + ++ EGD
Sbjct: 12 AATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDK 48
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia
enterocolitica, YfuA [TaxId: 630]}
Length = 311
Score = 26.6 bits (57), Expect = 4.4
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 391 SIVQAIADAESELRGIDRLIVRASGTESLIRIMAEGDD 428
++V++ D ++ GI + +E +++ EG
Sbjct: 15 NLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSA 52
>d1bsga_ e.3.1.1 (A:) beta-Lactamase, class A {Streptomyces albus G
[TaxId: 1962]}
Length = 266
Score = 26.4 bits (57), Expect = 5.0
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 234 VRADIGIALDGDGDRVIIV----DEKGAIVNGDQIMALIAR 270
D G+ +++ + D ++A AR
Sbjct: 219 TNNDAGVTWPPGRAPIVLTVLTAKTEQDAARDDGLVADAAR 259
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 359
Score = 26.3 bits (57), Expect = 5.6
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 174 LQGLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGIN 214
L GLR VV+ A A + +LGADVV I D+P+ ++
Sbjct: 4 LSGLR-VVELAGIGPGPHAAMILGDLGADVVRI-DRPSSVD 42
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 25.9 bits (56), Expect = 6.4
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 12/123 (9%)
Query: 176 GLRIVVDCANGASYKVAPEVFWELGADVVVIGDKPNGININLDCGSTNVLSLQRKVHEVR 235
GLR ++ + + G + + H++R
Sbjct: 33 GLRSIIYLCPEPYPESNLQFLKSNGIRL-----------FQFGIEGNKEPFVNIPDHKIR 81
Query: 236 ADIGIALDGDGDRVIIVDEKGAIVNGDQIMAL-IAREWMSHSLLRGNGIVTTVMSNIGLE 294
+ + LD V+I ++G G + L ++W S+ + + +
Sbjct: 82 MALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQ 141
Query: 295 RFI 297
RF+
Sbjct: 142 RFM 144
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 26.0 bits (56), Expect = 7.2
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 1/90 (1%)
Query: 118 GYKVSTDIEDRIETLLEDDLTSYLSCYDSIGHAKRVDGVHDRYIEHVKRTLPRDVTLQGL 177
G + + L + + + G + R + +
Sbjct: 108 GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP 167
Query: 178 RIVVDCANGASYKVAPEVFWELGADVVVIG 207
+ ++ G GA+ +V G
Sbjct: 168 SLDIEVDGGLGPSTIDVA-ASAGANCIVAG 196
>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate
reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Length = 163
Score = 25.9 bits (56), Expect = 7.6
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 235 RADIGIALDGDGDRVIIV 252
IG+ ++ + +I++
Sbjct: 141 HVFIGMQMEERTNTLILM 158
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 25.7 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 174 LQGLRIVVDCANGASYKVAPEVFWELGADVVVI 206
LQG++ V+D S ++ GADV+ I
Sbjct: 5 LQGIK-VLDFTGVQSGPSCTQMLAWFGADVIKI 36
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 25.7 bits (55), Expect = 8.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 415 GTESLIRIMAEGDDLSRIKRIVDDLAKV 442
E+L G D+ ++ I ++A+V
Sbjct: 12 SGEALAGEKGVGIDIPTVQAIAKEIAEV 39
>d1i2sa_ e.3.1.1 (A:) beta-Lactamase, class A {Bacillus
licheniformis [TaxId: 1402]}
Length = 255
Score = 25.6 bits (55), Expect = 8.9
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 234 VRADIGIALDGDGDRVIIV----DEKGAIVNGDQIMALIAR 270
R DI I GD V++ +K D+++A +
Sbjct: 209 TRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYDDKLIAEATK 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.403
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,667
Number of extensions: 83468
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 35
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)