HHsearch alignment for GI: 254780545 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.36 E-value=7.6e-12 Score=104.69 Aligned_cols=159 Identities=26% Similarity=0.427 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC---CCC-------EECCCHH
Q ss_conf 698898528899999999987433567664201233311003787425888999974246---997-------0205857
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA---NVP-------FFTISGS 215 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~---~~~-------f~~~~~s 215 (647)
T Consensus 177 klDpvIGRd~---EI~r~i~IL~R---------R~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~ 244 (823)
T CHL00095 177 NLDPVIGRDK---EIERVIQILGR---------RTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIG 244 (823)
T ss_pred CCCCCCCCHH---HHHHHHHHHHH---------HCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHH
T ss_conf 9998759569---99999999977---------32488502379998799999999997608899868759936884288
Q ss_pred HHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 886--444203324599999999873780120632356414455789886268898899899853032357782999962
Q gi|254780545|r 216 DFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 216 ~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
T Consensus 245 ~L~AGtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~--~g~~Daa-NlLKPaL-------arGel~~IGAT 314 (823)
T CHL00095 245 LLLAGTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAA--EGAIDAA-NILKPAL-------ARGKLQCIGAT 314 (823)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCC--CCCHHHH-HHHHHHH-------HCCCCEEEEEC
T ss_conf 775334222679999999999998579869997351653288976--6643178-8765786-------48986699707
Q ss_pred CCCC-----CCCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9810-----08833316564231410001347889999999
Q gi|254780545|r 294 NRPD-----VLDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 294 n~~~-----~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
T Consensus 315 T~~EYrk~iEkD~AL~R--RFq-~V~V~EPs~e~t~~IL~g 352 (823)
T CHL00095 315 TLEEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILLG 352 (823)
T ss_pred CHHHHHHHHHCCHHHHH--HCC-CCCCCCCCHHHHHHHHHH
T ss_conf 88999998530588996--268-410289987999999999