HHsearch alignment for GI: 254780545 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.26  E-value=2.7e-10  Score=93.44  Aligned_cols=126  Identities=26%  Similarity=0.437  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf             889852889999999998743356766420123---331-1003787425888999974246---997020585788644
Q gi|254780545|r  148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL  220 (647)
Q Consensus       148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~  220 (647)
T Consensus       509 ~~ViGQd~AI~~vs~ai~r-------sraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~  581 (823)
T CHL00095        509 KRIIGQDEAVVAVSKAIRR-------ARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK  581 (823)
T ss_pred             HHHCCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             7840769999999999999-------970899899974689987899887799999999997478202588535101554


Q ss_pred             ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf             ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r  221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS--  284 (647)
Q Consensus       221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~--  284 (647)
T Consensus       582 hsvsrLIGaPPGYVGy~eG--G~LTeaVrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlDdG~LtD~~G  645 (823)
T CHL00095        582 HTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEK-----------AH---PDIFNLLLQILDDGRLTDSKG  645 (823)
T ss_pred             CCHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHCCCCCCCCCCC
T ss_conf             2076745899876677878--8201988719986998621311-----------38---899998876516884348999


Q ss_pred             -----CCEEEEEECCCC
Q ss_conf             -----782999962981
Q gi|254780545|r  285 -----EGVILIAATNRP  296 (647)
Q Consensus       285 -----~~v~vi~aTn~~  296 (647)
T Consensus       646 r~vdF~NtIIImTSNlG  662 (823)
T CHL00095        646 RTIDFKNTLIIMTSNLG  662 (823)
T ss_pred             CEEECEEEEEEECCCCC
T ss_conf             98843103999716505