HHsearch alignment for GI: 254780545 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.26 E-value=2.7e-10 Score=93.44 Aligned_cols=126 Identities=26% Similarity=0.437 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCC-EEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHH
Q ss_conf 889852889999999998743356766420123---331-1003787425888999974246---997020585788644
Q gi|254780545|r 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRI---PHG-VLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVEL 220 (647)
Q Consensus 148 ~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~---p~g-~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~ 220 (647)
T Consensus 509 ~~ViGQd~AI~~vs~ai~r-------sraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~ 581 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRR-------ARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK 581 (823)
T ss_pred HHHCCCHHHHHHHHHHHHH-------HHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 7840769999999999999-------970899899974689987899887799999999997478202588535101554
Q ss_pred ------------HHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CCC--
Q ss_conf ------------420332459999999987378012063235641445578988626889889989985303-2-357--
Q gi|254780545|r 221 ------------FVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG-F-ESS-- 284 (647)
Q Consensus 221 ------------~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg-~-~~~-- 284 (647)
T Consensus 582 hsvsrLIGaPPGYVGy~eG--G~LTeaVrr~PysVvLfDEIEK-----------AH---pdV~nilLQvlDdG~LtD~~G 645 (823)
T CHL00095 582 HTVSKLIGSPPGYVGYNEG--GQLTEAVRKKPYTVVLFDEIEK-----------AH---PDIFNLLLQILDDGRLTDSKG 645 (823)
T ss_pred CCHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCEEEEECHHHH-----------CC---HHHHHHHHHHCCCCCCCCCCC
T ss_conf 2076745899876677878--8201988719986998621311-----------38---899998876516884348999
Q ss_pred -----CCEEEEEECCCC
Q ss_conf -----782999962981
Q gi|254780545|r 285 -----EGVILIAATNRP 296 (647)
Q Consensus 285 -----~~v~vi~aTn~~ 296 (647)
T Consensus 646 r~vdF~NtIIImTSNlG 662 (823)
T CHL00095 646 RTIDFKNTLIIMTSNLG 662 (823)
T ss_pred CEEECEEEEEEECCCCC
T ss_conf 98843103999716505