HHsearch alignment for GI: 254780545 and conserved domain: CHL00178

Probab=99.91  E-value=7.3e-24  Score=191.66  Aligned_cols=308  Identities=21%  Similarity=0.284  Sum_probs=216.1

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH---------------------------------
Q ss_conf             42012333110037874258889999742469970205857886444---------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF---------------------------------  221 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~---------------------------------  221 (647)
T Consensus      1452 rL~lspSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~L~nkp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1531 (2133)
T CHL00178       1452 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPEGFLIDDIDIDASDDIDASDDIDASDDIDASD 1531 (2133)
T ss_pred             ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02777667637978776666899988764253751895078873458766645534432100123211123332322222


Q ss_pred             ----------------HHCCHHH--HHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--
Q ss_conf             ----------------2033245--99999999873780120632356414455789886268898899899853032--
Q gi|254780545|r  222 ----------------VGVGASR--VRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF--  281 (647)
Q Consensus       222 ----------------~g~g~~~--vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~--  281 (647)
T Consensus      1532 d~~~~~~t~~~~~~~d~~~~i~rf~itLqFELAK~MSPCIIWIPNIHeLnvnes~~---------~~LglLln~Ls~d~e 1602 (2133)
T CHL00178       1532 DIDRDLHTELELLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNY---------FSLGLLVNHLSRDCE 1602 (2133)
T ss_pred             CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCH---------HHHHHHHHHHCCCCC
T ss_conf             10000000013456544444455656888999875498279717654335675531---------579999987424320


Q ss_pred             -CCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHH--HCCCCCCCC-CCHHHHHHHHHCCCHHHH
Q ss_conf             -3577829999629810088333165642314100013478899999998--548877732-110245441203798999
Q gi|254780545|r  282 -ESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVH--SRNVPLAPN-VILKTIARGTPGFSGADL  357 (647)
Q Consensus       282 -~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~--~~~~~~~~~-~d~~~la~~t~g~sgAdi  357 (647)
T Consensus      1603 r~StrNilVIASTHIPqKVDPALIaPNRLdt~InIRrLlIpQrrK~F~iLl~tkGF~leKkmf~~n~FGSiTmGynaRDL 1682 (2133)
T CHL00178       1603 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFRLEKKMFHTNGFGSITMGSNARDL 1682 (2133)
T ss_pred             CCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEEEECCCHHHHHHHHEEEECCCCEECCCCCCCCCCCCEECCCCHHHH
T ss_conf             02424548996278887678100586422302554203666653023303303552012445565776651058868889


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HC-
Q ss_conf             999999876455320242104568999750136865567666866778999999999999985058773234322--01-
Q gi|254780545|r  358 RNLVNEAALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--IP-  434 (647)
Q Consensus       358 ~~~~~eAa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--ip-  434 (647)
T Consensus      1683 ~aL~NEaLsISItqkKSiIDTnTIR~ALhRQtw~l~--sqv~~~q~-hgiLfYkIGkAViQN~Ll~n~~idPiSiY~kKk 1759 (2133)
T CHL00178       1683 VALTNEALSISITQKKSIIDTNTIRSAFHRQTWDLR--SQVRSVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYIKKK 1759 (2133)
T ss_pred             HHHHHHHHEEEEECCCCEEECCHHHHHHHHHHHCCC--CCCCCCCC-CCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             998654611343136524401038899888765200--11461456-766764140999999998539997178886430


Q ss_pred             ---CCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHH
Q ss_conf             ---455564056400244322689999999999987898888861--36---87565--2335589999999
Q gi|254780545|r  435 ---RGRALGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLA  496 (647)
Q Consensus       435 ---Rg~alG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA  496 (647)
T Consensus      1760 ~~k~~~~YLskWYlElg--TsmKelTIL~yIL~ClAGSaAqDsWsl~epn~eN~I~~d~lvENDsdLv~glL 1829 (2133)
T CHL00178       1760 SCNEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLL 1829 (2133)
T ss_pred             CCCCCCCHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             15556724666554166--24899999999975012256765236889865567313442126458888898