HHsearch alignment for GI: 254780545 and conserved domain: CHL00179
>CHL00179 consensus.
Probab=99.92 E-value=2.1e-24 Score=195.55 Aligned_cols=312 Identities=20% Similarity=0.259 Sum_probs=221.1
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHH------------------------------------
Q ss_conf 42012333110037874258889999742469970205857886------------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFV------------------------------------ 218 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~------------------------------------ 218 (647)
T Consensus 1594 ~L~lspSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~ 1673 (2262)
T CHL00179 1594 RLALPPSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKFLDDNKGYLIDDIDIDDRDDIDIDDRDDIDDDLDTELL 1673 (2262)
T ss_pred ECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 02778767627978776666899988764253751895177763358654456444443322344431111100344441
Q ss_pred ------HHHHHCCHH--HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCCE
Q ss_conf ------444203324--599999999873780120632356414455789886268898899899853032---357782
Q gi|254780545|r 219 ------ELFVGVGAS--RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGF---ESSEGV 287 (647)
Q Consensus 219 ------~~~~g~g~~--~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~---~~~~~v 287 (647)
T Consensus 1674 t~~n~l~~~~~~~~~~f~itLqfELAk~MSPCIIWIPNIHdL~vNes~~l---------~LGlLln~ls~d~er~strNi 1744 (2262)
T CHL00179 1674 TMPNVLTMYMTPKIDQFEITLPLELAKAMSPCIIWIPNIHDLYVNESNYL---------SLGLLVNHLPRDCERCSTRNI 1744 (2262)
T ss_pred CCCCCHHHHHHHHHHHEEHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCH---------HHHHHHHHHCCCCCCCCCCCE
T ss_conf 26530025654222440017989999864983797075332256754403---------589999873244200243454
Q ss_pred EEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99996298100883331656423141000134788999999985--48877732-1102454412037989999999998
Q gi|254780545|r 288 ILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPN-VILKTIARGTPGFSGADLRNLVNEA 364 (647)
Q Consensus 288 ~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~-~d~~~la~~t~g~sgAdi~~~~~eA 364 (647)
T Consensus 1745 lVIASTHIPqKVDPaLIaPNRLdt~InIRrLlipQrrK~F~iLl~tkGF~lekk~~~~n~FGSiTmG~naRDL~aL~NEa 1824 (2262)
T CHL00179 1745 LVIASTHIPQKVDPALIAPNKSNTCIKIRRLLIPQQRKHFFILSYTRGFRLEKKMSHTNGFGSITMGSNARDLVALTNEV 1824 (2262)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHEEECCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 89962788876780004865334236642036666530333123035522214455657766510588688899986546
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH--H----CCCCC
Q ss_conf 76455320242104568999750136865567666866778999999999999985058773234322--0----14555
Q gi|254780545|r 365 ALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKITAYHEAGHAVVACHVPKADPLHKATI--I----PRGRA 438 (647)
Q Consensus 365 a~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~vAyHEAGHAlva~~l~~~~~v~kVTI--i----pRg~a 438 (647)
T Consensus 1825 LsISItqkKSiIdtnTIR~ALhRQtw~l~--sqv~~~q~-~giLfYqIGkAV~QN~Ll~n~~idPiSiymkkk~~k~~~s 1901 (2262)
T CHL00179 1825 LSISITQKKSIIDTNTIRSALHRQTWDLR--SQVRSVQD-HEILFYQIGRAVAQNVLLSNCSIDPISIYMKKKSCKEGDS 1901 (2262)
T ss_pred HEEEEECCCCEEECCHHHHHHHHHHHHHC--CCCCCCCC-CCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 21333136524401038899888775101--33551356-7666401519999999985389971888864421355660
Q ss_pred CCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--CC---CCCCC--CCCCCHHHHHHHHHHHH
Q ss_conf 64056400244322689999999999987898888861--36---87565--23355899999999998
Q gi|254780545|r 439 LGMVMQLPEADRHSTTYVWMTSRLTILMGGRVAEEFTF--GE---DNVTS--GAMSDIEYATKLARVMV 500 (647)
Q Consensus 439 lG~t~~~p~~d~~~~tk~~l~~~i~v~LgGRaAEei~f--G~---~~itt--GAs~DL~~AT~iA~~mV 500 (647)
T Consensus 1902 YLskWYlElg--TsmKelTIL~yiL~ClAGsaAqDsWsi~gp~~eN~I~~d~~vEnDsdLa~gLLE~~L 1968 (2262)
T CHL00179 1902 YLSKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSPPGPDEKNWITSYGFVENDSDLVHGLLESAL 1968 (2262)
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 4676664166--238999999999860000567652368898655674334310032688999888776