HHsearch alignment for GI: 254780545 and conserved domain: CHL00195

Probab=100.00  E-value=0  Score=482.83  Aligned_cols=240  Identities=30%  Similarity=0.435  Sum_probs=210.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHH
Q ss_conf             2422569889852889999999-998743356766420123331100378742588899997424699702058578864
Q gi|254780545|r  141 NVGSVTFKDVAGVDEAKEDLQE-IVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVE  219 (647)
Q Consensus       141 ~~~~v~f~dv~g~~~~k~~~~~-~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~  219 (647)
T Consensus       221 ~~~~~~~~~vGGl~~lK~wl~~r~~~f~~~a---~~~gl~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~  297 (491)
T CHL00195        221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQA---ENYGLPTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFG  297 (491)
T ss_pred             EECCCCCHHCCCHHHHHHHHHHHHHHHHHHH---HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHH
T ss_conf             7489980414688999999999889862336---6459999987999799998789999999866389469966799756


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             44203324599999999873780120632356414455789886268898899899853032357782999962981008
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVL  299 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~l  299 (647)
T Consensus       298 ~~vGesE~~~r~~f~~A~~~aP~ilfiDEidk~~~~~~~~~d~--g~s~rv~~~~Lt~m~--e~~~~VfViattN~~~~L  373 (491)
T CHL00195        298 GIVGESESRMRQMIQLAETISPCILWIDEIDKAFSGLDSKGDS--GTSNRVLATFITWLS--EKKSPVFVVATANNIDSL  373 (491)
T ss_pred             HHCCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCC--CHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCC
T ss_conf             0067049999999999986198589974654542588888887--232899999999864--689976999958997558


Q ss_pred             CHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCC-CCC-CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             83331656423141000134788999999985488-777-3211024544120379899999999987645532024210
Q gi|254780545|r  300 DAALLRPGRFDRQITVPNPDIVGREHILMVHSRNV-PLA-PNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVT  377 (647)
Q Consensus       300 D~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~-~~~-~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~  377 (647)
T Consensus       374 ~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~~-r~~~  452 (491)
T CHL00195        374 PLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSEK-REFT  452 (491)
T ss_pred             CHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf             987708987770476489598999999999985447887554699999976859888999999999999998758-8665


Q ss_pred             HHHHHHHHHHC
Q ss_conf             45689997501
Q gi|254780545|r  378 MQEFEDAKDKI  388 (647)
Q Consensus       378 ~~dl~~A~~rv  388 (647)
T Consensus       453 ~~dl~~a~~~~  463 (491)
T CHL00195        453 TEDICLALKQL  463 (491)
T ss_pred             HHHHHHHHHHC
T ss_conf             89999999817