HHsearch alignment for GI: 254780545 and conserved domain: COG0324
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=96.00 E-value=0.088 Score=31.89 Aligned_cols=98 Identities=20% Similarity=0.350 Sum_probs=57.6
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHH--CCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCC
Q ss_conf 33311003787425888999974246997020585788644420--3324599999999873780120632356414455
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVG--VGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRG 257 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g--~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~ 257 (647)
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm---QvYr~mdIGTAKps---~~e~~~vp-HhliDi~~p~---e~ 71 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM---QVYRGLDIGTAKPS---LEELAGVP-HHLIDIRDPT---ES 71 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH---HHCCCCCCCCCCCC---HHHHCCCC-EEEECCCCCC---CC
T ss_conf 963799989887577899999999829928930235---53188863079999---99985899-7875456832---25
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEEEECC
Q ss_conf 789886268898899899853032357-7829999629
Q gi|254780545|r 258 IGLGGGNDEREQTLNQLLVEMDGFESS-EGVILIAATN 294 (647)
Q Consensus 258 ~~~~~~~~e~~~~ln~ll~~mdg~~~~-~~v~vi~aTn 294 (647)
T Consensus 72 y---sa~~----f~~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 72 Y---SAAE----FQRDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred C---CHHH----HHHHHHHHHHHHHHCCCCCEEECCHH
T ss_conf 5---4999----99999999999996899879976679