HHsearch alignment for GI: 254780545 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.29 E-value=3.4e-11 Score=99.97 Aligned_cols=162 Identities=26% Similarity=0.386 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC----------CCCEECCC
Q ss_conf 25698898528899999999987433567664201233311003787425888999974246----------99702058
Q gi|254780545|r 144 SVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA----------NVPFFTIS 213 (647)
Q Consensus 144 ~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~----------~~~f~~~~ 213 (647)
T Consensus 166 ~gklDPvIGRd~EI---~r~iqIL~R---------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEI---RRTIQILSR---------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCCCCHHHHH---HHHHHHHHC---------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEC
T ss_conf 58988773747999---999999835---------688998476689888999998999997469999787588799714
Q ss_pred HHHHH--HHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 57886--4442033245999999998737801206323564144557898862688988998998530323577829999
Q gi|254780545|r 214 GSDFV--ELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIA 291 (647)
Q Consensus 214 ~s~~~--~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~ 291 (647)
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~g~-a~D----AaN-iLKPa---LARGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD----AAN-LLKPA---LARGELRCIG 304 (786)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCC-CCC----HHH-HHHHH---HHCCCEEEEE
T ss_conf 87674646535738999999999985179849998235540577766666-512----566-46778---7458737997
Q ss_pred ECCCCCC-----CCHHHCCCCCCCCEEEECHHHHHHHHHHHHH
Q ss_conf 6298100-----8833316564231410001347889999999
Q gi|254780545|r 292 ATNRPDV-----LDAALLRPGRFDRQITVPNPDIVGREHILMV 329 (647)
Q Consensus 292 aTn~~~~-----lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~ 329 (647)
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRG 344 (786)
T ss_pred ECCHHHHHHHHHHCHHHHH--CCC-EEECCCCCHHHHHHHHHH
T ss_conf 3558999887330667784--675-102799898999999987