HHsearch alignment for GI: 254780545 and conserved domain: COG0593
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair].
Probab=99.14 E-value=6e-09 Score=83.73 Aligned_cols=225 Identities=20% Similarity=0.264 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCH
Q ss_conf 1242256988985288999999999874335676642012333110037874258889999742469-----97020585
Q gi|254780545|r 140 GNVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISG 214 (647)
Q Consensus 140 ~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~ 214 (647)
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCC-------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCH
T ss_conf 689888554220477449999999998756688-------6895799879999789999999999986299864885048
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 78864442033245999999998737801206323564144557898862688988998998530323577829999629
Q gi|254780545|r 215 SDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATN 294 (647)
Q Consensus 215 s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn 294 (647)
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~-------~~~kqIvltsdr 217 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALL-------ENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCEEEECHHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCC
T ss_conf 99899999998850488888764--2673555138675677157-----999999999888-------508879997078
Q ss_pred CCCC---CCHHHCCCCCCCC--EEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8100---8833316564231--410001347889999999854--88777321102454412037989999999998764
Q gi|254780545|r 295 RPDV---LDAALLRPGRFDR--QITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALM 367 (647)
Q Consensus 295 ~~~~---lD~al~RpgRfd~--~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~ 367 (647)
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~-~nvReLegaL~~l~~~ 293 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD-RNVRELEGALNRLDAF 293 (408)
T ss_pred CCHHHCCCCHHHHH--HHHCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 83221103588998--9863057752798889999999999986588888799-999999700-3099999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 55320242104568999750136
Q gi|254780545|r 368 AARRNRRLVTMQEFEDAKDKILM 390 (647)
Q Consensus 368 a~r~~~~~i~~~dl~~A~~rv~~ 390 (647)
T Consensus 294 a~~~~-~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 294 ALFTK-RAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHCC-CCCCHHHHHHHHHHHHH
T ss_conf 98538-75769999999998640