HHsearch alignment for GI: 254780545 and conserved domain: COG0703
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism].
Probab=97.06 E-value=0.00069 Score=47.13 Aligned_cols=51 Identities=29% Similarity=0.552 Sum_probs=38.5
Q ss_pred CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 31100378742588899997424699702058578864442033245999999998
Q gi|254780545|r 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAK 237 (647)
Q Consensus 182 ~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~ 237 (647)
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~~G 53 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEEEG 53 (172)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCCH--HHHHHHHC---CCHHHHHHHHH
T ss_conf 61899717999776899999998199802246--99999979---69999999982