HHsearch alignment for GI: 254780545 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.49 E-value=8.5e-07 Score=68.16 Aligned_cols=199 Identities=29% Similarity=0.433 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC----CCCCEECCCHHH
Q ss_conf 2422569889852889999999998743356766420123331100378742588899997424----699702058578
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE----ANVPFFTISGSD 216 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e----~~~~f~~~~~s~ 216 (647)
T Consensus 71 ~~~~~~~~~LIG~~~~~~~~~eqik------~~ap~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 71 YLKSEALDDLIGESPSLQELREQIK------AYAPSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred HCCCHHHHHHHCCCHHHHHHHHHHH------HHCCCC----CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 1022156666356888999999998------618999----847986688753889999999861213589879977777
Q ss_pred HHHHHH-----H------CCH-HHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC----
Q ss_conf 864442-----0------332-459999999987378012063235641445578988626889889989985303----
Q gi|254780545|r 217 FVELFV-----G------VGA-SRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDG---- 280 (647)
Q Consensus 217 ~~~~~~-----g------~g~-~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg---- 280 (647)
T Consensus 141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP-------~~~-------Q~kLl~~le~g~~~ 203 (403)
T COG1221 141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLP-------PEG-------QEKLLRVLEEGEYR 203 (403)
T ss_pred HCCCHHHHHHHCCCCCEEECCCCCCCCHHEEC---CCCEEEHHHHHHCC-------HHH-------HHHHHHHHHCCCEE
T ss_conf 37677777773200000025667867642052---79777656365379-------858-------99999998718657
Q ss_pred -CCC----CCCEEEEEECCCCCCCCHHHCC-CCCCC--CEEEECHHHHHHHH-HH-------HHHHHCCCCCCCCCCHHH
Q ss_conf -235----7782999962981008833316-56423--14100013478899-99-------999854887773211024
Q gi|254780545|r 281 -FES----SEGVILIAATNRPDVLDAALLR-PGRFD--RQITVPNPDIVGRE-HI-------LMVHSRNVPLAPNVILKT 344 (647)
Q Consensus 281 -~~~----~~~v~vi~aTn~~~~lD~al~R-pgRfd--~~i~~~~P~~~~r~-~i-------~~~~~~~~~~~~~~d~~~ 344 (647)
T Consensus 204 rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~ 281 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPE 281 (403)
T ss_pred ECCCCCCCCCCCEEEECCCC--CHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 66888886777404513566--8799987405255641675431897243555599999999999999739998888899
Q ss_pred HHHHHHCC--CH--HHHHHHHHHHHHHH
Q ss_conf 54412037--98--99999999987645
Q gi|254780545|r 345 IARGTPGF--SG--ADLRNLVNEAALMA 368 (647)
Q Consensus 345 la~~t~g~--sg--Adi~~~~~eAa~~a 368 (647)
T Consensus 282 a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 282 ALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999984889983999999999999973