HHsearch alignment for GI: 254780545 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=98.42 E-value=4.3e-07 Score=70.31 Aligned_cols=72 Identities=24% Similarity=0.417 Sum_probs=48.7
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHCCC---CCCEECCCHHHHHHHHHHCCH-HHHHHHHHHHHHHCCHHEEHHHHHHH
Q ss_conf 33311003787425888999974246---997020585788644420332-45999999998737801206323564
Q gi|254780545|r 180 IPHGVLLVGPPGTGKTLLARAVAGEA---NVPFFTISGSDFVELFVGVGA-SRVRDMFEQAKNNSPCIVFVDEIDAV 252 (647)
Q Consensus 180 ~p~g~ll~GppGtGKTlla~a~a~e~---~~~f~~~~~s~~~~~~~g~g~-~~vr~lf~~a~~~~p~iifiDeida~ 252 (647)
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~-~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK-VDLLIIDDIGYE 179 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf 5882899899998799999999999998398499988599999999987455268999988752-898998236776