HHsearch alignment for GI: 254780545 and conserved domain: COG1485
>COG1485 Predicted ATPase [General function prediction only].
Probab=97.72 E-value=0.00012 Score=52.58 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHC---CCCCCEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 21000011242256988985288999999999874335-6---7664201---233311003787425888999974246
Q gi|254780545|r 133 SKAKLLSGNVGSVTFKDVAGVDEAKEDLQEIVDFLCDP-Q---KFKRLGG---RIPHGVLLVGPPGTGKTLLARAVAGEA 205 (647)
Q Consensus 133 SkAk~~~~~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~-~---~~~~~g~---~~p~g~ll~GppGtGKTlla~a~a~e~ 205 (647)
T Consensus 10 sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~l 89 (367)
T COG1485 10 SPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESL 89 (367)
T ss_pred CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98999997505677888867899999999999986264445552111003688888358888997864999999998658
Q ss_pred CCCE-ECCCHHHHH-----HHHHHCCHHHHHHHHHHHHHHC--CHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9970-205857886-----4442033245999999998737--8012063235641445578988626889889989985
Q gi|254780545|r 206 NVPF-FTISGSDFV-----ELFVGVGASRVRDMFEQAKNNS--PCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVE 277 (647)
Q Consensus 206 ~~~f-~~~~~s~~~-----~~~~g~g~~~vr~lf~~a~~~~--p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~ 277 (647)
T Consensus 90 p~~~k~R~HFh~FM~~vH~~l~~l~g~~d--pl~~iA~~~~~~~~vLCfDEF~Vt------DI~---D--AMiL~rL~~~ 156 (367)
T COG1485 90 PGERKRRLHFHRFMARVHQRLHTLQGQTD--PLPPIADELAAETRVLCFDEFEVT------DIA---D--AMILGRLLEA 156 (367)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHCCCEEEEEEEEEC------CHH---H--HHHHHHHHHH
T ss_conf 76456655077999999999999718888--657999999841788986303623------757---8--8999999999
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH--HCCCHH
Q ss_conf 303235778299996298100883331656423141000134788999999985488777321102454412--037989
Q gi|254780545|r 278 MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGT--PGFSGA 355 (647)
Q Consensus 278 mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t--~g~sgA 355 (647)
T Consensus 157 L--f~--~GV~lvaTSN~~----P~~LY~dGlqR~~FLP~------I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl 222 (367)
T COG1485 157 L--FA--RGVVLVATSNTA----PDNLYKDGLQRERFLPA------IDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPL 222 (367)
T ss_pred H--HH--CCCEEEEECCCC----HHHHCCCCHHHHHHHHH------HHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCC
T ss_conf 9--97--796899958999----67854460257763779------9999875479970587662356666674455478
Q ss_pred HH
Q ss_conf 99
Q gi|254780545|r 356 DL 357 (647)
Q Consensus 356 di 357 (647)
T Consensus 223 ~~ 224 (367)
T COG1485 223 DA 224 (367)
T ss_pred CH
T ss_conf 67