HHsearch alignment for GI: 254780545 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.53 E-value=4.4e-13 Score=113.66 Aligned_cols=227 Identities=22% Similarity=0.286 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHH
Q ss_conf 42256988985288999999999874335676642012333110037874258889999742469970205857886444
Q gi|254780545|r 142 VGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELF 221 (647)
Q Consensus 142 ~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~ 221 (647)
T Consensus 21 RP~-~l~efiGQ~~vk~~L~ifI~A-------Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPK-TLDEFIGQEKVKEQLQIFIKA-------AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CCC-CHHHHCCHHHHHHHHHHHHHH-------HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCC--
T ss_conf 865-488851839999999999999-------9844987674786479987688899999998567737636620157--
Q ss_pred HHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--------CC--------
Q ss_conf 20332459999999987378012063235641445578988626889889989985303235--------77--------
Q gi|254780545|r 222 VGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES--------SE-------- 285 (647)
Q Consensus 222 ~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~--------~~-------- 285 (647)
T Consensus 91 ----~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v--------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 ----PGDLAAILTNLE--EGDVLFIDEIHRLSPAV--------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----HHHHHHHHHCCC--CCCEEEEEHHHHCCHHH--------------HHHHHHHHHHEEEEEEECCCCCCCEEECCCC
T ss_conf ----265999986398--67767772553147428--------------9896467531057789724875534763799
Q ss_pred CEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 82999962981008833316564231410001347889999999854887--7732110245441203798999999999
Q gi|254780545|r 286 GVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP--LAPNVILKTIARGTPGFSGADLRNLVNE 363 (647)
Q Consensus 286 ~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~--~~~~~d~~~la~~t~g~sgAdi~~~~~e 363 (647)
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~-~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEE-AALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred CEEEEEECCCCCCCCCHHHH--HCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHCCCC-CHHHHHHHHH
T ss_conf 81375101346645633688--6286045405888999999998888738776857-999999863699-3899999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 8764553202421045689997501368655676668667789
Q gi|254780545|r 364 AALMAARRNRRLVTMQEFEDAKDKILMGAERRSTAMTEEEKKI 406 (647)
Q Consensus 364 Aa~~a~r~~~~~i~~~dl~~A~~rv~~G~ek~~~~~~~~ek~~ 406 (647)
T Consensus 227 VRDfa~V~~~~~I~~~ia~~aL~~L~Vd----~~GLd~~D~k~ 265 (332)
T COG2255 227 VRDFAQVKGDGDIDRDIADKALKMLDVD----ELGLDEIDRKY 265 (332)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCC----CCCCCHHHHHH
T ss_conf 9999998168820489999999872964----02556899999