HHsearch alignment for GI: 254780545 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.63 E-value=3.2e-15 Score=129.16 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHC
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469970205857886444203
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGV 224 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~ 224 (647)
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~ 84 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------S 84 (436)
T ss_pred CCHHHHCCHHHHHCCCCHHHHHHH---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCC-------C
T ss_conf 778785571866189943899996---------499860577789998888999999876177669951523-------4
Q ss_pred CHHHHHHHHHHHHHHCC----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCCC
Q ss_conf 32459999999987378----0120632356414455789886268898899899853032357782999962--98100
Q gi|254780545|r 225 GASRVRDMFEQAKNNSP----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT--NRPDV 298 (647)
Q Consensus 225 g~~~vr~lf~~a~~~~p----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT--n~~~~ 298 (647)
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------Q-------D~lLp~v----E~G~iilIGATTENPsF~ 146 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------Q-------DALLPHV----ENGTIILIGATTENPSFE 146 (436)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHH-------H-------HHHHHHH----CCCEEEEEECCCCCCCEE
T ss_conf 679999999999998725883499872253337445-------6-------5510332----488689996267898714
Q ss_pred CCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCC-CCC-----CHHHHHHHHHCCCHHHHHHHHHH--HHHHH
Q ss_conf 883331656423141000134788999999985--488777-321-----10245441203798999999999--87645
Q gi|254780545|r 299 LDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLA-PNV-----ILKTIARGTPGFSGADLRNLVNE--AALMA 368 (647)
Q Consensus 299 lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~-~~~-----d~~~la~~t~g~sgAdi~~~~~e--Aa~~a 368 (647)
T Consensus 147 ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~----s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 147 LNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRL----SNGDARRALNLLELAALS 219 (436)
T ss_pred ECHHHHH--H-HHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
T ss_conf 0388861--1-04156516998999999999986541377765566888999999986----286199998899999986
Q ss_pred HHHHCCCCCHHHHHHHHHHC
Q ss_conf 53202421045689997501
Q gi|254780545|r 369 ARRNRRLVTMQEFEDAKDKI 388 (647)
Q Consensus 369 ~r~~~~~i~~~dl~~A~~rv 388 (647)
T Consensus 220 ~~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 220 AEPDE-VLILELLEEILQRR 238 (436)
T ss_pred CCCCC-CCCHHHHHHHHHHH
T ss_conf 27775-24799999998655