HHsearch alignment for GI: 254780545 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=99.07 E-value=8.1e-09 Score=82.79 Aligned_cols=187 Identities=30% Similarity=0.432 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC-------EECC-----
Q ss_conf 5698898528899999999987433567664201233311003787425888999974246997-------0205-----
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVP-------FFTI----- 212 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~-------f~~~----- 212 (647)
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred CCHHHHCCCHHHHHHHHHHHHH-----------CCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 0077763648999999999980-----------84233365137777671049999999956889877772253166686
Q ss_pred ----CHHHHHHHHHHCCHH-----HHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf ----857886444203324-----59999999987378-----0120632356414455789886268898899899853
Q gi|254780545|r 213 ----SGSDFVELFVGVGAS-----RVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEM 278 (647)
Q Consensus 213 ----~~s~~~~~~~g~g~~-----~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~m 278 (647)
T Consensus 82 I~~g~~~DviEi---DaASn~gVddiR~i~e~v-~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTL 143 (515)
T COG2812 82 INEGSLIDVIEI---DAASNTGVDDIREIIEKV-NYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTL 143 (515)
T ss_pred HHCCCCCCCHHH---HHHHCCCHHHHHHHHHHH-CCCCCCCCCEEEEEECHHHH--------------HHHHHHHHHCCC
T ss_conf 514886410113---644454867999999872-46886666418998318764--------------378888875111
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf 03235778299996298100883331-656423141000134788999999985--488777321102454412037989
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGA 355 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgA 355 (647)
T Consensus 144 E--EPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkr---i~~~-~I~~~L~~i~~~E~I~~e~~-aL~~ia~~a~G-s~R 215 (515)
T COG2812 144 E--EPPSHVKFILATTEPQKIPNTILSRCQRFDFKR---LDLE-EIAKHLAAILDKEGINIEED-ALSLIARAAEG-SLR 215 (515)
T ss_pred C--CCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCC---CCHH-HHHHHHHHHHHHCCCCCCHH-HHHHHHHHCCC-CHH
T ss_conf 3--686674899853886768404552122022257---9999-99999999987448754799-99999998289-745
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999987645
Q gi|254780545|r 356 DLRNLVNEAALMA 368 (647)
Q Consensus 356 di~~~~~eAa~~a 368 (647)
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHCC
T ss_conf 6777899999706