HHsearch alignment for GI: 254780545 and conserved domain: COG3284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].
Probab=97.36 E-value=0.0012 Score=45.35 Aligned_cols=183 Identities=28% Similarity=0.420 Sum_probs=99.4
Q ss_pred CEEECCCCCHHHHHHHHHHHCC--CCCCEECCCHH----HHH-HHHHH------CCHHH--HHHHHHHHHHHCCHHEEHH
Q ss_conf 1100378742588899997424--69970205857----886-44420------33245--9999999987378012063
Q gi|254780545|r 183 GVLLVGPPGTGKTLLARAVAGE--ANVPFFTISGS----DFV-ELFVG------VGASR--VRDMFEQAKNNSPCIVFVD 247 (647)
Q Consensus 183 g~ll~GppGtGKTlla~a~a~e--~~~~f~~~~~s----~~~-~~~~g------~g~~~--vr~lf~~a~~~~p~iifiD 247 (647)
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLFLD 414 (606)
T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCEECC---CCCCHHH
T ss_conf 7685387655689999999853655698379985034477646777445765643300106655410157---8760898
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEE-------E
Q ss_conf 235641445578988626889889989985-----3032357782999962981008833316564231410-------0
Q gi|254780545|r 248 EIDAVGRHRGIGLGGGNDEREQTLNQLLVE-----MDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQIT-------V 315 (647)
Q Consensus 248 eida~~~~r~~~~~~~~~e~~~~ln~ll~~-----mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~-------~ 315 (647)
T Consensus 415 eIgd~p~----------~~Q-s~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDMPL----------ALQ-SRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred HHHHCHH----------HHH-HHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCH---HHHHHCCCCHHHHHHHHCCEEE
T ss_conf 7611418----------999-9999998618252358852157799983467579---9998759714878887447155
Q ss_pred CHHHHHHHH---HHHHHHH-CC----CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 013478899---9999985-48----87773211024544120379899999999987645532024210456899975
Q gi|254780545|r 316 PNPDIVGRE---HILMVHS-RN----VPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAKD 386 (647)
Q Consensus 316 ~~P~~~~r~---~i~~~~~-~~----~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~~ 386 (647)
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred CCCCHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCC---CCCEEECCCCCHHHH
T ss_conf 06861104665789999998726877568999999998578998-2899999999998707---997357144988887