HHsearch alignment for GI: 254780545 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=98.01 E-value=1.7e-05 Score=58.79 Aligned_cols=197 Identities=29% Similarity=0.428 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHHHH
Q ss_conf 2422569889852889999999998743356766420123331100378742588899997424---6997020585788
Q gi|254780545|r 141 NVGSVTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGSDF 217 (647)
Q Consensus 141 ~~~~v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s~~ 217 (647)
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred CCHHCCCCCCCCCCHHHHHHHHHHHHH----------HCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 431024456230699999999999987----------2689807984588853899999998737555798666312225
Q ss_pred HH------HHHHC-----CHHHH-HHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHH--HHCCCC
Q ss_conf 64------44203-----32459-99999998737801206323564144557898862688988-998998--530323
Q gi|254780545|r 218 VE------LFVGV-----GASRV-RDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQT-LNQLLV--EMDGFE 282 (647)
Q Consensus 218 ~~------~~~g~-----g~~~v-r~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~-ln~ll~--~mdg~~ 282 (647)
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~------------lQaKLLRvLQegEieRvG 350 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA------------LQAKLLRVLQEGEIERVG 350 (550)
T ss_pred CHHHHHHHHHCCCCCCCCCCHHCCCCCEEECC---CCEEECHHHCCCCHH------------HHHHHHHHHHHCCEEECC
T ss_conf 37888888745332233351014676356557---975760220367877------------889999998636525347
Q ss_pred CCC----CEEEEEECCCCCCCCHHHCCCCCCCC-------EEEECHHHHHHHH-HH--HH-HHHCCC---------CCCC
Q ss_conf 577----82999962981008833316564231-------4100013478899-99--99-985488---------7773
Q gi|254780545|r 283 SSE----GVILIAATNRPDVLDAALLRPGRFDR-------QITVPNPDIVGRE-HI--LM-VHSRNV---------PLAP 338 (647)
Q Consensus 283 ~~~----~v~vi~aTn~~~~lD~al~RpgRfd~-------~i~~~~P~~~~r~-~i--~~-~~~~~~---------~~~~ 338 (647)
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~-~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LE-EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCCEEEEEEEEEECCCHH--HH-HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 996367778998213530--99-998749515545321020013789834588667999999999998863976403398
Q ss_pred CCCHHHHHHHHHCCCH--HHHHHHHHHHHHHH
Q ss_conf 2110245441203798--99999999987645
Q gi|254780545|r 339 NVILKTIARGTPGFSG--ADLRNLVNEAALMA 368 (647)
Q Consensus 339 ~~d~~~la~~t~g~sg--Adi~~~~~eAa~~a 368 (647)
T Consensus 428 ~-Al~~L~~y--~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 E-ALELLSSY--EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred H-HHHHHHCC--CCCCCHHHHHHHHHHHHHHC
T ss_conf 9-99999739--99971999998999999970