HHsearch alignment for GI: 254780545 and conserved domain: COG4650
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=96.46 E-value=0.007 Score=39.84 Aligned_cols=103 Identities=28% Similarity=0.506 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------H------HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHH------CCCC
Q ss_conf 5698898528899999999987433------5------67664201233311003787425888999974------2469
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCD------P------QKFKRLGGRIPHGVLLVGPPGTGKTLLARAVA------GEAN 206 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~------~------~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a------~e~~ 206 (647)
T Consensus 162 sry~~iasr--fa~ere~tl~~lksgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~s 239 (531)
T COG4650 162 SRYNAIASR--FAEEREQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFS 239 (531)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 677789999--999889999999733321585778899999999861469768646887436689999999998887537
Q ss_pred CCEECCCHHHHHHHHHHCCHH-----HHHHHHHHHH--------HHCCHHEEHHHHHHHH
Q ss_conf 970205857886444203324-----5999999998--------7378012063235641
Q gi|254780545|r 207 VPFFTISGSDFVELFVGVGAS-----RVRDMFEQAK--------NNSPCIVFVDEIDAVG 253 (647)
Q Consensus 207 ~~f~~~~~s~~~~~~~g~g~~-----~vr~lf~~a~--------~~~p~iifiDeida~~ 253 (647)
T Consensus 240 g~fvevncatlr----gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelg 295 (531)
T COG4650 240 GAFVEVNCATLR----GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELG 295 (531)
T ss_pred CCEEEEEEEEEC----CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHHHHCC
T ss_conf 862788630004----75288998764001314633455442433778657567433247