HHsearch alignment for GI: 254780545 and conserved domain: COG4988
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=93.22 E-value=0.45 Score=26.77 Aligned_cols=118 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----------------------------------------------
Q ss_conf 420123331100378742588899997424699-----------------------------------------------
Q gi|254780545|r 175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV----------------------------------------------- 207 (647)
Q Consensus 175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~----------------------------------------------- 207 (647)
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~ 420 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP 420 (559)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCC
T ss_conf 06754896799988999978999999847577778448889931000687788867246279984056418877731687
Q ss_pred -----------------CEECCCHHHHHHHHHHCCHH------HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf -----------------70205857886444203324------5999999998737801206323564144557898862
Q gi|254780545|r 208 -----------------PFFTISGSDFVELFVGVGAS------RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN 264 (647)
Q Consensus 208 -----------------~f~~~~~s~~~~~~~g~g~~------~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~ 264 (647)
T Consensus 421 ~~s~e~i~~al~~a~l~~~v~~--p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA----------~LD 488 (559)
T COG4988 421 DASDEEIIAALDQAGLLEFVPK--PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA----------HLD 488 (559)
T ss_pred CCCHHHHHHHHHHHCHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC----------CCC
T ss_conf 6789999999998257876167--7764330215888778999999999998558888898548756----------798
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf 6889889989985303235778299996298100883331656423141000
Q gi|254780545|r 265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP 316 (647)
Q Consensus 265 ~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~ 316 (647)
T Consensus 489 ~etE~~i~~~l~~l~-----~~ktvl~itHrl~~~~-------~~D~I~vld 528 (559)
T COG4988 489 AETEQIILQALQELA-----KQKTVLVITHRLEDAA-------DADRIVVLD 528 (559)
T ss_pred HHHHHHHHHHHHHHH-----HCCEEEEEECCHHHHH-------CCCEEEEEC
T ss_conf 767999999999997-----2786999976737785-------499899964