HHsearch alignment for GI: 254780545 and conserved domain: COG4988

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=93.22  E-value=0.45  Score=26.77  Aligned_cols=118  Identities=24%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             HHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCC-----------------------------------------------
Q ss_conf             420123331100378742588899997424699-----------------------------------------------
Q gi|254780545|r  175 RLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV-----------------------------------------------  207 (647)
Q Consensus       175 ~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~-----------------------------------------------  207 (647)
T Consensus       341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~  420 (559)
T COG4988         341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP  420 (559)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCC
T ss_conf             06754896799988999978999999847577778448889931000687788867246279984056418877731687


Q ss_pred             -----------------CEECCCHHHHHHHHHHCCHH------HHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf             -----------------70205857886444203324------5999999998737801206323564144557898862
Q gi|254780545|r  208 -----------------PFFTISGSDFVELFVGVGAS------RVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGN  264 (647)
Q Consensus       208 -----------------~f~~~~~s~~~~~~~g~g~~------~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~  264 (647)
T Consensus       421 ~~s~e~i~~al~~a~l~~~v~~--p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA----------~LD  488 (559)
T COG4988         421 DASDEEIIAALDQAGLLEFVPK--PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA----------HLD  488 (559)
T ss_pred             CCCHHHHHHHHHHHCHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCC----------CCC
T ss_conf             6789999999998257876167--7764330215888778999999999998558888898548756----------798


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEEC
Q ss_conf             6889889989985303235778299996298100883331656423141000
Q gi|254780545|r  265 DEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVP  316 (647)
Q Consensus       265 ~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~  316 (647)
T Consensus       489 ~etE~~i~~~l~~l~-----~~ktvl~itHrl~~~~-------~~D~I~vld  528 (559)
T COG4988         489 AETEQIILQALQELA-----KQKTVLVITHRLEDAA-------DADRIVVLD  528 (559)
T ss_pred             HHHHHHHHHHHHHHH-----HCCEEEEEECCHHHHH-------CCCEEEEEC
T ss_conf             767999999999997-----2786999976737785-------499899964