HHsearch alignment for GI: 254780545 and conserved domain: COG5245
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton].
Probab=97.59 E-value=0.00013 Score=52.38 Aligned_cols=203 Identities=22% Similarity=0.234 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHCCCCCCEEECCCCCHHHHHH-HHHHHCCCCCCEECCCHHHHH
Q ss_conf 6988985288999999---9998743---35676642012333110037874258889-999742469970205857886
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQ---EIVDFLC---DPQKFKRLGGRIPHGVLLVGPPGTGKTLL-ARAVAGEANVPFFTISGSDFV 218 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~---~~v~~l~---~~~~~~~~g~~~p~g~ll~GppGtGKTll-a~a~a~e~~~~f~~~~~s~~~ 218 (647)
T Consensus 1453 ~~~~Iag~~l~~~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~- 1531 (3164)
T COG5245 1453 NNGSIAGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC- 1531 (3164)
T ss_pred CCCCCCCCEECHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCC-
T ss_conf 3666677010102430467731245331319989999874063499978999751011263666543001567751124-
Q ss_pred HHHHHCCHHHHHHHHHHHHHHCC---------------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 44420332459999999987378---------------012063235641445578988626889889989985303235
Q gi|254780545|r 219 ELFVGVGASRVRDMFEQAKNNSP---------------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFES 283 (647)
Q Consensus 219 ~~~~g~g~~~vr~lf~~a~~~~p---------------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~ 283 (647)
T Consensus 1532 ----t~T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~lVLFcDeIn-L--p~~~~y~~~~vI--~FlR~-l~e~QGfw~ 1600 (3164)
T COG5245 1532 ----TMTPSKLSVLERET-EYYPNTGVVRLYPKPVVKDLVLFCDEIN-L--PYGFEYYPPTVI--VFLRP-LVERQGFWS 1600 (3164)
T ss_pred ----CCCHHHHHHHHHHC-EEECCCCEEEECCCCCHHHEEEEEECCC-C--CCCCCCCCCCEE--EEEHH-HHHHCCCCC
T ss_conf ----57788999998640-1523688279766742132178731147-7--420013897448--86287-787525555
Q ss_pred C--------CCEEEEEECCCCCCCCHH-HCCCCCCCC---EEEECHHHHHHHHHHHHHHHCCCCC-CCCCC--HHHHHHH
Q ss_conf 7--------782999962981008833-316564231---4100013478899999998548877-73211--0245441
Q gi|254780545|r 284 S--------EGVILIAATNRPDVLDAA-LLRPGRFDR---QITVPNPDIVGREHILMVHSRNVPL-APNVI--LKTIARG 348 (647)
Q Consensus 284 ~--------~~v~vi~aTn~~~~lD~a-l~RpgRfd~---~i~~~~P~~~~r~~i~~~~~~~~~~-~~~~d--~~~la~~ 348 (647)
T Consensus 1601 s~~~~wvTI~~i~l~Gacnp~t--d~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~a 1678 (3164)
T COG5245 1601 SIAVSWVTICGIILYGACNPGT--DEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSA 1678 (3164)
T ss_pred CHHHHHHHHCCEEEECCCCCCC--CCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3666576211359983689999--96657527787468359996286334499999999998888459898877999888
Q ss_pred ------------------HHCCCHHHHHHHHH
Q ss_conf ------------------20379899999999
Q gi|254780545|r 349 ------------------TPGFSGADLRNLVN 362 (647)
Q Consensus 349 ------------------t~g~sgAdi~~~~~ 362 (647)
T Consensus 1679 Sv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245 1679 SVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 89999999886523200000337378889999