HHsearch alignment for GI: 254780545 and conserved domain: COG5271

Probab=95.71  E-value=0.037  Score=34.63  Aligned_cols=133  Identities=28%  Similarity=0.374  Sum_probs=81.8

Q ss_pred             CCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHH---HHHHHHH----C--CHHHHHH-HHHHHHHHCCHHEEHHH
Q ss_conf             23331100378742588899997424699702058578---8644420----3--3245999-99999873780120632
Q gi|254780545|r  179 RIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSD---FVELFVG----V--GASRVRD-MFEQAKNNSPCIVFVDE  248 (647)
Q Consensus       179 ~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~---~~~~~~g----~--g~~~vr~-lf~~a~~~~p~iifiDe  248 (647)
T Consensus      1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271        1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred             HCCCCEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCEEEECCCHHHHHHHCC-CEEEEEH
T ss_conf             528854622799866789999999974572478632011028987377887556761674246899985349-8799624


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC------------CCCCCCCEEEEEECCCC------CCCCHHHCCCCCCC
Q ss_conf             3564144557898862688988998998530------------32357782999962981------00883331656423
Q gi|254780545|r  249 IDAVGRHRGIGLGGGNDEREQTLNQLLVEMD------------GFESSEGVILIAATNRP------DVLDAALLRPGRFD  310 (647)
Q Consensus       249 ida~~~~r~~~~~~~~~e~~~~ln~ll~~md------------g~~~~~~v~vi~aTn~~------~~lD~al~RpgRfd  310 (647)
T Consensus      1620 iNL-aS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271        1620 INL-AS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred             HHH-HH-------------HHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEEECCCHHCCCCCCCCCHHHHH--HHH
T ss_conf             103-27-------------88998889988501442563113325216870554204811027985668788862--211


Q ss_pred             CEEEECHHHHHHHHHHHHH
Q ss_conf             1410001347889999999
Q gi|254780545|r  311 RQITVPNPDIVGREHILMV  329 (647)
Q Consensus       311 ~~i~~~~P~~~~r~~i~~~  329 (647)
T Consensus      1684 v-V~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271        1684 V-VKMDGLTTDDITHIANK 1701 (4600)
T ss_pred             E-EEECCCCCCHHHHHHHH
T ss_conf             5-77503453009999985