HHsearch alignment for GI: 254780545 and conserved domain: KOG0744
>KOG0744 consensus.
Probab=99.86 E-value=1e-20 Score=168.87 Aligned_cols=236 Identities=23% Similarity=0.287 Sum_probs=165.8
Q ss_pred CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHCCCC-------
Q ss_conf 2256988985----288999999999874335676642012-----333110037874258889999742469-------
Q gi|254780545|r 143 GSVTFKDVAG----VDEAKEDLQEIVDFLCDPQKFKRLGGR-----IPHGVLLVGPPGTGKTLLARAVAGEAN------- 206 (647)
Q Consensus 143 ~~v~f~dv~g----~~~~k~~~~~~v~~l~~~~~~~~~g~~-----~p~g~ll~GppGtGKTlla~a~a~e~~------- 206 (647)
T Consensus 133 Pa~eF~glWEsLiyds~lK~~ll~Ya~---s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744 133 PAAEFDGLWESLIYDSNLKERLLSYAA---SALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC
T ss_conf 511543057887641328999999999---99888761788744664148998579998822799999875146523764
Q ss_pred --CCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHC---CHH--EEHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf --9702058578864442033245999999998737---801--20632356414455789886-268898899899853
Q gi|254780545|r 207 --VPFFTISGSDFVELFVGVGASRVRDMFEQAKNNS---PCI--VFVDEIDAVGRHRGIGLGGG-NDEREQTLNQLLVEM 278 (647)
Q Consensus 207 --~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~---p~i--ifiDeida~~~~r~~~~~~~-~~e~~~~ln~ll~~m 278 (647)
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 44069997046788988712113899999999999717896899980787888999875413799821899999999989
Q ss_pred CCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC-----CC--------CCC-----
Q ss_conf 032357782999962981008833316564231410001347889999999854887-----77--------321-----
Q gi|254780545|r 279 DGFESSEGVILIAATNRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHSRNVP-----LA--------PNV----- 340 (647)
Q Consensus 279 dg~~~~~~v~vi~aTn~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~-----~~--------~~~----- 340 (647)
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~ 367 (423)
T KOG0744 290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA 367 (423)
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHH--HHHHEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
T ss_conf 986047977999626267777888611--754211038963999999999999999863843210000005677676676
Q ss_pred CHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 10245441-2037989999999998764553202421045689997
Q gi|254780545|r 341 ILKTIARG-TPGFSGADLRNLVNEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 341 d~~~la~~-t~g~sgAdi~~~~~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 368 ~~~~~~~~~~~gLSGRtlrkLP~La--ha~y~~~~~v~~~~fl~al 411 (423)
T KOG0744 368 LRNILIELSTVGLSGRTLRKLPLLA--HAEYFRTFTVDLSNFLLAL 411 (423)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCCCCCCHHHHHHHH
T ss_conf 7899998864477620576515888--8740677864868999999