HHsearch alignment for GI: 254780545 and conserved domain: KOG2170

Probab=96.87  E-value=0.007  Score=39.83  Aligned_cols=94  Identities=24%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCC---
Q ss_conf             985288999999-9998743356766420123331100378742588899997424699702058578864442033---
Q gi|254780545|r  150 VAGVDEAKEDLQ-EIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVG---  225 (647)
Q Consensus       150 v~g~~~~k~~~~-~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g---  225 (647)
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~---~~~Gl~S~~V~~fvat~hFP  154 (344)
T KOG2170          84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENL---YRGGLRSPFVHHFVATLHFP  154 (344)
T ss_pred             HHCHHHHHHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCCHHHHHHHHHHHH---HHCCCCCHHHHHHHHHCCCC
T ss_conf             63208799999999999862899------9987589830899875648999999998---75112562688765541599


Q ss_pred             -HHHHH--------HHHHHHHHHCCHHEEHHHHHHH
Q ss_conf             -24599--------9999998737801206323564
Q gi|254780545|r  226 -ASRVR--------DMFEQAKNNSPCIVFVDEIDAV  252 (647)
Q Consensus       226 -~~~vr--------~lf~~a~~~~p~iifiDeida~  252 (647)
T Consensus       155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm  190 (344)
T KOG2170         155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL  190 (344)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHC
T ss_conf             767899999999999999998557754873105435