HHsearch alignment for GI: 254780545 and conserved domain: KOG2228
>KOG2228 consensus.
Probab=95.08 E-value=0.01 Score=38.71 Aligned_cols=139 Identities=22% Similarity=0.365 Sum_probs=72.9
Q ss_pred CCCEEECCCCCHHHHHH-HHHHHC--CCCCCEECCCHHHHHH----------------H-----HHHCCHHHHHHHHHHH
Q ss_conf 33110037874258889-999742--4699702058578864----------------4-----4203324599999999
Q gi|254780545|r 181 PHGVLLVGPPGTGKTLL-ARAVAG--EANVPFFTISGSDFVE----------------L-----FVGVGASRVRDMFEQA 236 (647)
Q Consensus 181 p~g~ll~GppGtGKTll-a~a~a~--e~~~~f~~~~~s~~~~----------------~-----~~g~g~~~vr~lf~~a 236 (647)
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCCEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
T ss_conf 77269981477881674077876677517727999878500155899999999999997532124225334699999987
Q ss_pred ---HHHCCH-HEEH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCC-CCCCC
Q ss_conf ---873780-1206-32356414455789886268898899899853032357782999962981008833316-56423
Q gi|254780545|r 237 ---KNNSPC-IVFV-DEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNRPDVLDAALLR-PGRFD 310 (647)
Q Consensus 237 ---~~~~p~-iifi-Deida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~~~~lD~al~R-pgRfd 310 (647)
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h-----------~rQtllYnlfDisq-s~r~Piciig~Ttrld~lE~LEKRVKSRFs 196 (408)
T KOG2228 129 KKGDETTSGKVIFILDEFDLFAPH-----------SRQTLLYNLFDISQ-SARAPICIIGVTTRLDILELLEKRVKSRFS 196 (408)
T ss_pred HCCCCCCCCEEEEEEEHHHCCCCC-----------HHHHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 337877885199983100024640-----------35678999988876-247986999850323389999999874335
Q ss_pred CE-EEECHHH-HHHHHHHHHHHH
Q ss_conf 14-1000134-788999999985
Q gi|254780545|r 311 RQ-ITVPNPD-IVGREHILMVHS 331 (647)
Q Consensus 311 ~~-i~~~~P~-~~~r~~i~~~~~ 331 (647)
T Consensus 197 hr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228 197 HRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 52462269888588999999973