HHsearch alignment for GI: 254780545 and conserved domain: PRK00279

Probab=96.16  E-value=0.0028  Score=42.68  Aligned_cols=116  Identities=24%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             EEECCCCCHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCC
Q ss_conf             10037874258889999742469970205857886444203324599999999873780120632356414455789886
Q gi|254780545|r  184 VLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGG  263 (647)
Q Consensus       184 ~ll~GppGtGKTlla~a~a~e~~~~f~~~~~s~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~  263 (647)
T Consensus         3 iillG~PGsGKgTqa~~la~~~~~~~is~--GdllR~~--------------i~~~s~~g---~~i~~~-~~~G~-lV--   59 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIPHIST--GDMLRAA--------------IKAGTELG---KEAKSY-MDAGE-LV--   59 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECH--HHHHHHH--------------HHCCCHHH---HHHHHH-HHCCC-CC--
T ss_conf             99989999987999999999869917868--8999999--------------87399889---999999-97798-77--


Q ss_pred             CHHHHHHHHHHHH-HHCCCCCCCCEEEEEECCCCCCC------CHHHCCCCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf             2688988998998-53032357782999962981008------833316564-23141000134788999999
Q gi|254780545|r  264 NDEREQTLNQLLV-EMDGFESSEGVILIAATNRPDVL------DAALLRPGR-FDRQITVPNPDIVGREHILM  328 (647)
Q Consensus       264 ~~e~~~~ln~ll~-~mdg~~~~~~v~vi~aTn~~~~l------D~al~RpgR-fd~~i~~~~P~~~~r~~i~~  328 (647)
T Consensus        60 pd---~i~~~lv~~~l~~~~~~~G~IlD---GfPRt~~Qa~~l~~~l~~~~~~i~~Vi~l~v~~~~~~~Rl~~  126 (215)
T PRK00279         60 PD---EIVIGLVKERLAQPDCANGFLLD---GFPRTIPQAEALDEMLKEAGIKLDAVIEIDVPDEELVERLSG  126 (215)
T ss_pred             CH---HHHHHHHHHHHHCCCCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHC
T ss_conf             88---99999999998365655707986---899987999999999986499868899996889999999861