HHsearch alignment for GI: 254780545 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.60 E-value=4.3e-14 Score=120.96 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHH
Q ss_conf 56988985288999999999874335676642012333110037874258889999742469-----9702058578864
Q gi|254780545|r 145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVE 219 (647)
Q Consensus 145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~ 219 (647)
T Consensus 13 ~~l~di~g~~~~~~~L~~~i~---~--------~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r- 79 (318)
T PRK00440 13 RSLDEVVGQEEIVERLKSFVK---E--------KNMPH-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER- 79 (318)
T ss_pred CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC-
T ss_conf 989994196999999999998---7--------99866-9888959988999999999997698643476895164566-
Q ss_pred HHHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 4420332459999999987378------0120632356414455789886268898899899853032357782999962
Q gi|254780545|r 220 LFVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT 293 (647)
Q Consensus 220 ~~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT 293 (647)
T Consensus 80 -----~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~--------------~aq~aL~~~mE~~~~~--~~fil~~ 138 (318)
T PRK00440 80 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQT--TRFILSC 138 (318)
T ss_pred -----CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH--------------HHHHHHHHHHHCCCCC--CEEEEEC
T ss_conf -----717899999999972677899738999868553225--------------5678887643105666--2588634
Q ss_pred CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98100883331656423141000134788999999985--4887773211024544120379899999999987645532
Q gi|254780545|r 294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR 371 (647)
Q Consensus 294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~ 371 (647)
T Consensus 139 n~~~kii~~i~S--Rc-~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~-~l~~i~~~s~----gdlR~ain~L--q~~~~ 208 (318)
T PRK00440 139 NYSSKIIDPIQS--RC-AVFRFSPLPKEAVIERLRYIAKNEGLEITDD-ALEAIYYVSE----GDMRKAINAL--QAAAA 208 (318)
T ss_pred CCCCCCCCCHHH--HH-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC----CCHHHHHHHH--HHHHH
T ss_conf 883337615565--51-0111578999999999999999859998999-9999998649----9899999999--99997
Q ss_pred HCCCCCHHHHHHHH
Q ss_conf 02421045689997
Q gi|254780545|r 372 NRRLVTMQEFEDAK 385 (647)
Q Consensus 372 ~~~~i~~~dl~~A~ 385 (647)
T Consensus 209 ~~~~it~~~v~~~~ 222 (318)
T PRK00440 209 TGKEVTEEAVYKIT 222 (318)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 48987899999997