HHsearch alignment for GI: 254780545 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.60  E-value=4.3e-14  Score=120.96  Aligned_cols=197  Identities=24%  Similarity=0.342  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCC-----CCEECCCHHHHHH
Q ss_conf             56988985288999999999874335676642012333110037874258889999742469-----9702058578864
Q gi|254780545|r  145 VTFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEAN-----VPFFTISGSDFVE  219 (647)
Q Consensus       145 v~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~-----~~f~~~~~s~~~~  219 (647)
T Consensus        13 ~~l~di~g~~~~~~~L~~~i~---~--------~~~ph-lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r-   79 (318)
T PRK00440         13 RSLDEVVGQEEIVERLKSFVK---E--------KNMPH-LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDER-   79 (318)
T ss_pred             CCHHHHCCCHHHHHHHHHHHH---C--------CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCC-
T ss_conf             989994196999999999998---7--------99866-9888959988999999999997698643476895164566-


Q ss_pred             HHHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             4420332459999999987378------0120632356414455789886268898899899853032357782999962
Q gi|254780545|r  220 LFVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAAT  293 (647)
Q Consensus       220 ~~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aT  293 (647)
T Consensus        80 -----~id~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~--------------~aq~aL~~~mE~~~~~--~~fil~~  138 (318)
T PRK00440         80 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQT--TRFILSC  138 (318)
T ss_pred             -----CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCH--------------HHHHHHHHHHHCCCCC--CEEEEEC
T ss_conf             -----717899999999972677899738999868553225--------------5678887643105666--2588634


Q ss_pred             CCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             98100883331656423141000134788999999985--4887773211024544120379899999999987645532
Q gi|254780545|r  294 NRPDVLDAALLRPGRFDRQITVPNPDIVGREHILMVHS--RNVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMAARR  371 (647)
Q Consensus       294 n~~~~lD~al~RpgRfd~~i~~~~P~~~~r~~i~~~~~--~~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a~r~  371 (647)
T Consensus       139 n~~~kii~~i~S--Rc-~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~-~l~~i~~~s~----gdlR~ain~L--q~~~~  208 (318)
T PRK00440        139 NYSSKIIDPIQS--RC-AVFRFSPLPKEAVIERLRYIAKNEGLEITDD-ALEAIYYVSE----GDMRKAINAL--QAAAA  208 (318)
T ss_pred             CCCCCCCCCHHH--HH-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHCC----CCHHHHHHHH--HHHHH
T ss_conf             883337615565--51-0111578999999999999999859998999-9999998649----9899999999--99997


Q ss_pred             HCCCCCHHHHHHHH
Q ss_conf             02421045689997
Q gi|254780545|r  372 NRRLVTMQEFEDAK  385 (647)
Q Consensus       372 ~~~~i~~~dl~~A~  385 (647)
T Consensus       209 ~~~~it~~~v~~~~  222 (318)
T PRK00440        209 TGKEVTEEAVYKIT  222 (318)
T ss_pred             CCCCCCHHHHHHHH
T ss_conf             48987899999997