HHsearch alignment for GI: 254780545 and conserved domain: PRK04132

Probab=98.62  E-value=3.7e-08  Score=78.04  Aligned_cols=91  Identities=33%  Similarity=0.587  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCC-----CCCEECCCHHHHHHH
Q ss_conf             698898528899999999987433567664201233311003787425888999974246-----997020585788644
Q gi|254780545|r  146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEA-----NVPFFTISGSDFVEL  220 (647)
Q Consensus       146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~-----~~~f~~~~~s~~~~~  220 (647)
T Consensus        23 ~LddIVgQehIVkRLK~YV----------k~~-smP-HLLFaGPPGvGKt~~al~lar~l~ge~wr~nflelnas~~~--   88 (863)
T PRK04132         23 RLDEIVGQDHIVKRLKHYV----------KTG-SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER--   88 (863)
T ss_pred             CHHHHCCHHHHHHHHHHHH----------CCC-CCC-CEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCC--
T ss_conf             1655227499999999886----------238-885-44304899877144788888876143145556641442123--


Q ss_pred             HHHCCHHHHHHHHHHHHHHCC------HHEEHHHHHHHHC
Q ss_conf             420332459999999987378------0120632356414
Q gi|254780545|r  221 FVGVGASRVRDMFEQAKNNSP------CIVFVDEIDAVGR  254 (647)
Q Consensus       221 ~~g~g~~~vr~lf~~a~~~~p------~iifiDeida~~~  254 (647)
T Consensus        89 ----~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~  124 (863)
T PRK04132         89 ----GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ  124 (863)
T ss_pred             ----CCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             ----634888877750686645786542464436564010