HHsearch alignment for GI: 254780545 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.52 E-value=2.2e-13 Score=115.90 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCEECC-------------
Q ss_conf 6988985288999999999874335676642012333110037874258889999742469970205-------------
Q gi|254780545|r 146 TFKDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANVPFFTI------------- 212 (647)
Q Consensus 146 ~f~dv~g~~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e~~~~f~~~------------- 212 (647)
T Consensus 14 ~f~dvvgQ~~v~~~L~n~i~~-----------~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i 82 (541)
T PRK05563 14 TFEDVVGQEHITTTLKNQIIN-----------NRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKI 82 (541)
T ss_pred CHHHHCCCHHHHHHHHHHHHC-----------CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 776624849999999999984-----------993204530387995899999999999579998889857514889998
Q ss_pred -CHH--HHHHHHH--HCCHHHHHHHHHHHHHHCC-----HHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -857--8864442--0332459999999987378-----01206323564144557898862688988998998530323
Q gi|254780545|r 213 -SGS--DFVELFV--GVGASRVRDMFEQAKNNSP-----CIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFE 282 (647)
Q Consensus 213 -~~s--~~~~~~~--g~g~~~vr~lf~~a~~~~p-----~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~ 282 (647)
T Consensus 83 ~~g~~~Dv~Eidaas~~gvd~iR~~~~~~-~~~p~~~~~Kv~IiDEvhmls--------------~~a~nallKtlE--e 145 (541)
T PRK05563 83 NEGLLMDVIEIDAASNNGVDDIREIIENV-KYPPQEGKYKVYIMDEVHMLS--------------QGAVNAFLKTLE--E 145 (541)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHHC-EECCCCCCEEEEEEECCCCCC--------------HHHHHHHHHHHH--C
T ss_conf 56898873662444447889999999761-048767870599997723389--------------999999999985--4
Q ss_pred CCCCEEEEEECCCCCCCCHHHC-CCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 5778299996298100883331-656423141000134788999999985488777321102454412037989999999
Q gi|254780545|r 283 SSEGVILIAATNRPDVLDAALL-RPGRFDRQITVPNPDIVGREHILMVHSRNVPLAPNVILKTIARGTPGFSGADLRNLV 361 (647)
Q Consensus 283 ~~~~v~vi~aTn~~~~lD~al~-RpgRfd~~i~~~~P~~~~r~~i~~~~~~~~~~~~~~d~~~la~~t~g~sgAdi~~~~ 361 (647)
T Consensus 146 Pp~~~~Filatte~~ki~~tI~SRcq~f~f~-~i~~~~i~~~L~~I~-~~E~i~~~~~-al~lIa~~s~G-smRDAlslL 221 (541)
T PRK05563 146 PPSNVIFILATTDPQKLPITILSRCQRFDFK-RIKVKDIFKRLRKIV-EEQGIFADDK-SLNLIARMSDG-AMRDALSIL 221 (541)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHEEEEEEE-ECCHHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHCCC-CHHHHHHHH
T ss_conf 8777569997698442745567421357754-389999999999999-9849998789-99999974599-778899999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998764553202421045689997
Q gi|254780545|r 362 NEAALMAARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 362 ~eAa~~a~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 222 dQ~is~----~~~~it~~~v~~~l 241 (541)
T PRK05563 222 DQAISM----GDGKVDYDDVVSML 241 (541)
T ss_pred HHHHHH----CCCCCCHHHHHHHH
T ss_conf 999983----59986699999996