HHsearch alignment for GI: 254780545 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=99.00 E-value=3.5e-08 Score=78.23 Aligned_cols=209 Identities=16% Similarity=0.200 Sum_probs=125.3
Q ss_pred CCCHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC---CCCCEECCCHH
Q ss_conf 242256988-9852-889999999998743356766420123331100378742588899997424---69970205857
Q gi|254780545|r 141 NVGSVTFKD-VAGV-DEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE---ANVPFFTISGS 215 (647)
Q Consensus 141 ~~~~v~f~d-v~g~-~~~k~~~~~~v~~l~~~~~~~~~g~~~p~g~ll~GppGtGKTlla~a~a~e---~~~~f~~~~~s 215 (647)
T Consensus 12 l~~~~tfdnFi~g~N~~a~~~~~~l~---~~------~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~ 82 (234)
T PRK05642 12 LRDDATFANYYPGANAAALGYVERLC---EA------DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCCCHHCCCCCCCHHHHHHHHHHH---HC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 99977730357187599999999987---60------6787788389988999988999999999998079967997899
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCHHEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 88644420332459999999987378012063235641445578988626889889989985303235778299996298
Q gi|254780545|r 216 DFVELFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESSEGVILIAATNR 295 (647)
Q Consensus 216 ~~~~~~~g~g~~~vr~lf~~a~~~~p~iifiDeida~~~~r~~~~~~~~~e~~~~ln~ll~~mdg~~~~~~v~vi~aTn~ 295 (647)
T Consensus 83 ~~~~~~~--------~~~~~l~~-~-d~l~IDDi~~i~g~~~~-----e~~lF~l~N~~~-------~~~~~llits~~~ 140 (234)
T PRK05642 83 ELLDRGP--------ELLDNLEQ-Y-ELVCIDDLDVIAGKADW-----EEALFHLFNRLR-------DSGRRLLLAASKS 140 (234)
T ss_pred HHHHHHH--------HHHHHHHH-C-CEEEEECHHHHCCCHHH-----HHHHHHHHHHHH-------HCCCEEEEECCCC
T ss_conf 9875449--------99862422-7-98989364554688599-----999999999999-------8399599957879
Q ss_pred CCCCC---HHHCCCCCCC--CEEEECHHHHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 10088---3331656423--1410001347889999999854--887773211024544120379899999999987645
Q gi|254780545|r 296 PDVLD---AALLRPGRFD--RQITVPNPDIVGREHILMVHSR--NVPLAPNVILKTIARGTPGFSGADLRNLVNEAALMA 368 (647)
Q Consensus 296 ~~~lD---~al~RpgRfd--~~i~~~~P~~~~r~~i~~~~~~--~~~~~~~~d~~~la~~t~g~sgAdi~~~~~eAa~~a 368 (647)
T Consensus 141 P~~l~~~l~DL~S--Rl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v-~~yl~~r~~-R~~~~L~~~l~~Ld~~s 216 (234)
T PRK05642 141 PRELPVKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV-GHFILTRGT-RSMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHCCCHHHHHH--HHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf 5552300167999--9957812751489989999999999775468999899-999999735-88999999999999999
Q ss_pred HHHHCCCCCHHHHHHHH
Q ss_conf 53202421045689997
Q gi|254780545|r 369 ARRNRRLVTMQEFEDAK 385 (647)
Q Consensus 369 ~r~~~~~i~~~dl~~A~ 385 (647)
T Consensus 217 l-~~kr~iTiplvk~vL 232 (234)
T PRK05642 217 L-QAQRKLTIPFLKETL 232 (234)
T ss_pred H-HHCCCCCHHHHHHHH
T ss_conf 9-838999999999983